PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0028s0107.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family C3H
Protein Properties Length: 822aa    MW: 81930.8 Da    PI: 6.5034
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0028s0107.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.2e-076788526
                         --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                          C+ f+r+G C++Gd C+FaHg
  Vocar.0028s0107.1.p 67 ACPEFRRNGCCRRGDACPFAHG 88
                         7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.0E-46090IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.79E-56192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8926290IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-66289IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-56788IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-595127IPR000571Zinc finger, CCCH-type
SMARTSM003561398121IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0061157Biological ProcessmRNA destabilization
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003727Molecular Functionsingle-stranded RNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 822 aa     Download sequence    Send to blast
MDPLANKEVV FDLDAAAFSS DDFRMFQFKV KRCPRARPHD WTQCPFAHPG EKAKRRDPRK  60
YRYSGTACPE FRRNGCCRRG DACPFAHGVF ECWLHPSRYR TQMCTDGSNC KRRVCFFAHT  120
EGELRKPEED PLWLQQQLQA ELAAEQQVQQ QIQALKVFAS ILGPNASAVG GQQAPAGQPQ  180
PGLDMLKNLP SSTLTHILGA ASQGGPGSGP MGAGQQGGAG DGLLQLLQLV EQQQQQQQQS  240
SAAANTAQLP PPLAPAASAP ANLASLLSVV TAATGPGPAA GGGGNVATPA SAGASGPDMQ  300
MKLAQHLLQQ QTQQQQQQQQ QQPGAGLGPD ALQARLSAQL AGLCLQQQQQ QVKAADAEAK  360
QQQQQQQQAP AQTTLAMELL TMMASQQQQQ QQQAAQQQQL AAAAAAALAS ASQQQQAQQQ  420
QQAQQQQQAA AANPPPPALA ALQKLAALGV DLQSLGITAE ALSSQITAAS GAQAAAAANT  480
GLAHDTLALL SGVLQGSAFP LPTAASRGKN DSSSGPQSAV VAPSGASAVA PATASPTVPM  540
DSLTALLAAA ATSPPVQSVG GGVPGIPPGM LSGLQGMLGQ LALAGGAVPV PLPPQSSAPT  600
PAVPMASQLP QQQQPQMAST PPTPNLTVAP PLVERSSTSV ASDSSSAPPP AAATAPPPMS  660
LSSAPSATLS VKQGSEGSAS SAPASPPQAP PASAAAGATS GTVGSAGVSA SSALSALAAT  720
AAAAGAGGGG VDGNAALASL LAEVYSKPEM LLTAQSLIDR MAAGAAIGGA AAAAGMDATA  780
MAALAGLASA AAPPPQPQQA GPPASTGTSA SDEAGSGAVR P*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002947407.10.0CCCH zinc finger protein, partial
TrEMBLD8TM770.0D8TM77_VOLCA; CCCH zinc finger protein (Fragment)
STRINGXP_002947407.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP601532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-53C3H family protein