PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0031s0066.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family G2-like
Protein Properties Length: 907aa    MW: 92849.1 Da    PI: 5.4697
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0031s0066.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.26.8e-32188242155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k rlrWtpeLH+rFv av+qLGG+++AtPk il+lm ++gLt++h+kSHLQkYRl
  Vocar.0031s0066.1.p 188 KSRLRWTPELHNRFVAAVNQLGGPDRATPKGILKLMCLEGLTIYHIKSHLQKYRL 242
                          68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.578185245IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-30187244IPR009057Homeodomain-like
SuperFamilySSF466896.45E-18187245IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-23188242IPR006447Myb domain, plants
PfamPF002497.7E-9190241IPR001005SANT/Myb domain
PfamPF143792.8E-14353395IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 907 aa     Download sequence    Send to blast
MDKAERASST AIGTEDDWLL EFWPEPAAAD FLGPIPGTMQ PQQQHHQQHL NASQLSELLP  60
QHGSLQMGQF NLNNTTAPNE YLPGLQFDAA YGGKTNALAG LSGLLPEPQR TSTDGASALL  120
QSSDFMLPMG GVAHPLMQPQ NCLAGLPQPA FPDLPPLGGG LGGGSPFLMP GHFMAGQPQR  180
AAASGPPKSR LRWTPELHNR FVAAVNQLGG PDRATPKGIL KLMCLEGLTI YHIKSHLQKY  240
RLNIRLPGEA MQGDSADTDA SDGEGGAAVP SAPLDPSGYG GETQSALGGG GVGGAAAAAA  300
AAAAAAAAAP AEPTVSISAH GRSSARRVGG GGPAAAGGTS GSSGSAPSNT RRHLEEALLF  360
QMELQKKLHE QLESQRQLQL SLEAHGRYIA SLMEQEGLTG KLPELGTAPQ LGGGSAAAAA  420
AAAVQRRASG GLAPPSSSAH QHQHPTRSQS NGAAVLRADG GNLVGGGAVG QASLIGTGVG  480
GDASGGGGGG ATGGGGAAMS LRPTSANVAD LELQLQPSAS SAVAVAATAA ALTAHQSHAL  540
LQPHNHHNHL QQHHKQPTQQ QSQEQQQQQQ RQKHHNNQQQ QQQHAMQPQP LSSMAGGSSG  600
GGGGDLGAGC GLSSRMTGGG VSSALQLQQL GQRMEAVSGV VPSAAPASIP TAAHDPVLQP  660
QRLSCFGGQQ QQQQRLRQVS QTSSDLDDFA CGDLDADVEL IHEQHQQQQG QQQQQQHHHQ  720
ARQIPGDARR LGIGLRNCLA EEEEEEEGAR EEGGGGEGGG EGAGGGGLGG LPDLDFPDFP  780
DLDSAGLEQQ GLMGVPGDLS LNVSDLDASS GGIAAAAATA AGGLAVAAGD GGSLAAAHHA  840
LLPLEGRQQG QQQKQRLLDG DSEEEQKQQQ ARAQLQQQQL VSEDEVGDEE EVDRIKRQKL  900
RHADDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-23188241154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-23188241154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-23188241154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-23188241154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002951273.10.0phosphorus starvation response 1 protein, transcriptional regulator
TrEMBLD8TXY20.0D8TXY2_VOLCA; Phosphorus starvation response 1 protein, transcriptional regulator
STRINGXP_002951273.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1111645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.12e-26G2-like family protein