PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

Vocar.0035s0093.1.p

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

Protein Properties

Length: 214aa MW: 22583.8 Da PI: 8.9596

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0035s0093.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	34.4	4.8e-11	81	158	8	85
NF-YC 8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 +q e a d+k +lP a +++++ d+++++ sa+a ls a ++f+ + ++ a +krrt++ di+ +v + Vocar.0035s0093.1.p 81 QQQEVAGDLKAAALPSAWVRRVVGLDPEIQRCSADALLALSTAADVFLGAICAKATAAAAGAKRRTVRLDDIERCVRS 158 688999*******************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50118	12.51	1	73	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.7E-14	2	64	IPR009071	High mobility group box domain
Pfam	PF09011	7.9E-11	2	66	IPR009071	High mobility group box domain
SMART	SM00398	1.3E-8	2	74	IPR009071	High mobility group box domain
SuperFamily	SSF47095	1.03E-13	3	64	IPR009071	High mobility group box domain
CDD	cd01390	9.74E-13	3	58	No hit	No description
SuperFamily	SSF47113	5.2E-13	72	159	IPR009072	Histone-fold
Pfam	PF00808	1.6E-7	93	156	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.2E-12	94	161	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MAPPTAYMLF CNENREAVRQ KLVAAGHQKV AITLVAKELG QVWKGLSEEE KAAYKTRAEE 60 QQQQEQVAEG DAQQGSPSGE QQQEVAGDLK AAALPSAWVR RVVGLDPEIQ RCSADALLAL 120 STAADVFLGA ICAKATAAAA GAKRRTVRLD DIERCVRSDK RMTAVGLPAV LNMVSAAASN 180 AAETKAVQLG NKKARLEGAA VNNNIMRAFG LAK*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002957240.1	1e-152	hypothetical protein VOLCADRAFT_98278
TrEMBL	D8UF18	1e-151	D8UF18_VOLCA; Uncharacterized protein
STRING	XP_002957240.1	1e-152	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4674	11	11

Link Out ? help Back to Top
Phytozome	Vocar.0035s0093.1.p