PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

Vocar.0037s0095.1.p

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

Protein Properties

Length: 223aa MW: 24072.4 Da PI: 4.1367

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0037s0095.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	55.7	1.2e-17	4	93	3	92
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 ++d lP + +++++k +P + ++++d+ ++v c +efi +v+se+++ + re r i +d ++ al++lGf+ +v ++++ ++e Vocar.0037s0095.1.p 4 DNDVSLPRTTLQKMIKDLVPPDMRVANDTVDLVIACCTEFIQLVSSESNEVATRESRSIIHPDHVVRALTELGFQGFVGEVTAAWDTFKE 93 68999*************************************************************************999988887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.4E-30	3	136	IPR009072	Histone-fold
SuperFamily	SSF47113	2.79E-27	5	135	IPR009072	Histone-fold
Pfam	PF00808	1.8E-13	8	72	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MADDNDVSLP RTTLQKMIKD LVPPDMRVAN DTVDLVIACC TEFIQLVSSE SNEVATRESR 60 SIIHPDHVVR ALTELGFQGF VGEVTAAWDT FKEETKTAHS RKADLRKTGA EHAGLSEEEQ 120 ILLQQQMFAQ ARAQSMTTCE SAAAMHAAYE QAMAAQQQQQ GAPGTGPVGF YSAHQHPTTM 180 TSTTTMPPGE RGGGGGREPP GPADMVEEDD DDDDDDVDDY SE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	4e-30	3	132	10	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002953528.1	1e-107	hypothetical protein VOLCADRAFT_94228
TrEMBL	D8U4H0	1e-106	D8U4H0_VOLCA; Uncharacterized protein
STRING	XP_002953528.1	1e-107	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP2422	15	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.2	4e-31	nuclear factor Y, subunit B13

Link Out ? help Back to Top
Phytozome	Vocar.0037s0095.1.p