PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0050s0012.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

MYB_related

Protein Properties

Length: 1185aa MW: 122166 Da PI: 6.2052

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0050s0012.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34	6.9e-11	58	102	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W++ E+ l++ + +lG++ W+tI++ ++ R+++++k+ w++ Vocar.0050s0012.1.p 58 RGEWSPAEEAVLARKHMELGNK-WTTISHFLP-ARSDNDVKNIWHST 102 89******************.*****.*******99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.186	53	107	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-10	56	107	IPR009057	Homeodomain-like
SMART	SM00717	6.4E-8	57	105	IPR001005	SANT/Myb domain
Pfam	PF00249	9.9E-10	58	101	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.9E-14	58	104	IPR009057	Homeodomain-like
CDD	cd00167	3.92E-6	60	103	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1185 aa Download sequence Send to blast
MEEEEGGAEV EEDSASIEDS SRRRTGSGMT SLPRNINRQR APSIVGTVDG QRQRNAPRGE 60 WSPAEEAVLA RKHMELGNKW TTISHFLPAR SDNDVKNIWH STLRSKNSER RSFLRTYARA 120 VRDCANDAEA RKQAYEMAQR VCGPPQPIEQ ALATVQQQYQ QQLQMQANQQ DEVLADGDSP 180 EFEPDAERDS DQPAPGPGPD GPQPHSQAPQ PAQESLGEVA VRSGTCSRTN SAPDSQQHSG 240 GAKSEAKRIR LSGFGGLGKT NHEGACPIPE LNHSHNPPIA MPLHPNIPLR HFPPHQQDEQ 300 PPLPSPRLDG APGLQPQLPT ATTATAAGRG PMTLNRNSYC LGPEGVFGLM TCGSGGGVDS 360 ASLHMQQQQQ QRQHNQQQQL LQQLQQLQQQ QQQLYLAGYG CRTGAEVDSS CLARLSALHL 420 ATSDYQLLHR QQQQQQQQQQ QQPDAQGQRD ILAFANSPSS GAQFLQQQQQ QQQRPTLMQP 480 FYGLLATMSA PNNNNNNSNS SGNSNQQLLL ARNSGTASGL ITPAGGGGGS QPLAPRAGHH 540 QTLLAPPSSS SLPALASTAA AAGGAIGLAG TGLGGGLSGA GGQQPQPPSS GGLELDDFLG 600 GDLDLTAEDL MAMLGPQTSS QRCGPGSALL DSSLDAAGAH GTVFHCGDGG GGGGGRPSGP 660 PRGAAGDRQQ QQQLSVPLLP PHHLQDMQQQ QQQQQPDAFD SLLAELEQRG RLHVVQPHPP 720 LAGMLSLPLP EMGTPQQQQQ PQQQPFFQDD VLGLGPLGTP YASYSAAAFT SPYHCTPGPN 780 SLDLHSLDRQ TGRQTDTDMN AHIYLLFPPQ PQLRPNYPQH HTGQQGYLDP GSKQHLPQLN 840 PTHLHQHQQL QLGPQPLGAP RRGSALGMFG TTAVAACCNE SYSNGSSGLL SPRTFGAPLG 900 LTSLNGTTPQ HQHQQRPPGA TGGTPRSLQT VGSGGGGGGG GCSATAAWQS GIWAPGLLRG 960 VGSGAIATAA TDSSPAATAA VGTESLTGEA AGSGAGACMT GSAGATPPPP PGSAVTAVAA 1020 GDGGGCCGSG GFSGQTGSGL LPVDLLSFLA APAKVDVVTM GLDSGDLLDC MDCEGEALPE 1080 TGSAGGGCGG NGGGGSISGC SAAEPADPLT LLMSGRGSLA QRPPPPQQQQ QQVSGGRGGL 1140 VLRGAGGGAG GGGAQACGPA MKMSSSPSSS FSRSAGTIGP LLQL*

Sequence ? help Back to Top

Protein Sequence Length: 1185 aa Download sequence Send to blast

MEEEEGGAEV EEDSASIEDS SRRRTGSGMT SLPRNINRQR APSIVGTVDG QRQRNAPRGE  60
WSPAEEAVLA RKHMELGNKW TTISHFLPAR SDNDVKNIWH STLRSKNSER RSFLRTYARA  120
VRDCANDAEA RKQAYEMAQR VCGPPQPIEQ ALATVQQQYQ QQLQMQANQQ DEVLADGDSP  180
EFEPDAERDS DQPAPGPGPD GPQPHSQAPQ PAQESLGEVA VRSGTCSRTN SAPDSQQHSG  240
GAKSEAKRIR LSGFGGLGKT NHEGACPIPE LNHSHNPPIA MPLHPNIPLR HFPPHQQDEQ  300
PPLPSPRLDG APGLQPQLPT ATTATAAGRG PMTLNRNSYC LGPEGVFGLM TCGSGGGVDS  360
ASLHMQQQQQ QRQHNQQQQL LQQLQQLQQQ QQQLYLAGYG CRTGAEVDSS CLARLSALHL  420
ATSDYQLLHR QQQQQQQQQQ QQPDAQGQRD ILAFANSPSS GAQFLQQQQQ QQQRPTLMQP  480
FYGLLATMSA PNNNNNNSNS SGNSNQQLLL ARNSGTASGL ITPAGGGGGS QPLAPRAGHH  540
QTLLAPPSSS SLPALASTAA AAGGAIGLAG TGLGGGLSGA GGQQPQPPSS GGLELDDFLG  600
GDLDLTAEDL MAMLGPQTSS QRCGPGSALL DSSLDAAGAH GTVFHCGDGG GGGGGRPSGP  660
PRGAAGDRQQ QQQLSVPLLP PHHLQDMQQQ QQQQQPDAFD SLLAELEQRG RLHVVQPHPP  720
LAGMLSLPLP EMGTPQQQQQ PQQQPFFQDD VLGLGPLGTP YASYSAAAFT SPYHCTPGPN  780
SLDLHSLDRQ TGRQTDTDMN AHIYLLFPPQ PQLRPNYPQH HTGQQGYLDP GSKQHLPQLN  840
PTHLHQHQQL QLGPQPLGAP RRGSALGMFG TTAVAACCNE SYSNGSSGLL SPRTFGAPLG  900
LTSLNGTTPQ HQHQQRPPGA TGGTPRSLQT VGSGGGGGGG GCSATAAWQS GIWAPGLLRG  960
VGSGAIATAA TDSSPAATAA VGTESLTGEA AGSGAGACMT GSAGATPPPP PGSAVTAVAA  1020
GDGGGCCGSG GFSGQTGSGL LPVDLLSFLA APAKVDVVTM GLDSGDLLDC MDCEGEALPE  1080
TGSAGGGCGG NGGGGSISGC SAAEPADPLT LLMSGRGSLA QRPPPPQQQQ QQVSGGRGGL  1140
VLRGAGGGAG GGGAQACGPA MKMSSSPSSS FSRSAGTIGP LLQL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002956540.1	0.0	hypothetical protein VOLCADRAFT_97533
TrEMBL	D8UCZ5	0.0	D8UCZ5_VOLCA; Uncharacterized protein
STRING	XP_002956540.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP12455	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	4e-11	myb domain protein 119

Link Out ? help Back to Top
Phytozome	Vocar.0050s0012.1.p