PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0052s0030.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

C3H

Protein Properties

Length: 1417aa MW: 143113 Da PI: 7.2148

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0052s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.3	3.6e-10	931	953	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C++++r+GtC yG++Ck++H+p Vocar.0052s0030.1.p 931 NCPYYMRYGTCGYGGSCKYNHPP 953 7********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	2.62E-5	926	952	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.249	926	954	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.6E-5	926	953	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.5E-8	931	953	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF53098	8.72E-5	1176	1332	IPR012337	Ribonuclease H-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1417 aa Download sequence Send to blast
MASALHVYAN LLWRDSKVEA RVKKLAALRL LQEPHYRLPL DELSRALVSS HDSTISGDLL 60 APARLADIIF AELCFVHSDG TGNVLLDAAS LMTAGKDCLK VYIDRVWDTS SPRSWAHNQL 120 AWYIVSRQHI DMRPHDLFLA PVDDAESFLA AAWTSRMDLR DHPDHPYTSL RQLLRGETRL 180 ELTPDLSAIR LNFSKLLQQD QQQYHQQTPP QQQQQLQAGG PSASGREHHG NGHDTATAAA 240 AAAAAGRGGD DDGGAMEWGE YGGEDGAYGN SEAAIDIAAD VAAAMAAMQR ASFANGLGGS 300 GRHGDAGNGV GNRDAEEYYE EAEECGDGGE GYGEDDDRET TRGRGFRGGG GGAAAAGGSR 360 YANGGGGGAA AAAASNNQPV LPLRPDLLQI YIRAVFAASG SPHDHLMAVV ALALADAGRG 420 GSAGHGGNRG LPFPGAIAPD THRFRLPLHR LVTHVRETAP HLLPPPPPPH HSGGNGGGGW 480 LAGALSQRLQ ERSSRGCFKV LLPGGGAGTG TTGTTATWGG EGGHGYGGGG DDVEAAVVSL 540 DLDVLRERVV EALAAAAAVV FSGSRPVDEI RRTAAVHLAS RTRPFAGRAH CVRLITLART 600 LGGELPPEVF DPNRLGGFER LVGSESSNNV MHVFRKAMPG LSPGHGEEVG PFITLNLGKL 660 LAGAGVRDLD SIMTGGRSGR GEGGGSGASW AGRGGGGGGV PEAAPPSPAT AASSSRTAAF 720 AAASSAASHS GGSRDPAQPA PQAQTQGSGH AGIGGSSSSH NSLPPPPSDA ALRQAVESLF 780 SLSESGRAAG AGAGSTEYAL AAAAAKRTAA LSLVKALHSQ QGGFLPLTRL SDIVINAVPG 840 SPDLERLLAA DPDLFEIQEA WYGGPRSVRL RASGVMARAA AAATTASGAG DATAATAVAN 900 GGSSHSSHTA GTSTAAAGTS DALPRRPNTM NCPYYMRYGT CGYGGSCKYN HPPLTPGQPP 960 EQQPAPAAAA AAAAAAAAAA AAVHGAGVQR TPSTAAAASY RHPQRQEQAQ AQNQHHQAAV 1020 PTAVAGQEAG SGGGGGGGAA AAPRLSLSTP EVKVVTTACT PDHLDMLQHC YAAPQVAVAC 1080 KVHRAAYNHH HHHQPHHNHH HHPMSASSSA VEVGQVCLVQ LYAPAVAAAT GAVAAGSGGA 1140 AGATRGSPGS VGAAVGGSAG AGGGGGSSMS PAPRWPATVY LVDPAAGEDK KGLLLPSLSP 1200 LLEDRAIPKI IYCSSEVVPY MPRIAPLYDI SVLHALIARA PHAMLGAPAA AAAAGGGGPG 1260 EAAAVAVPPL ASLLQQHGVV TAAGAAAATV APAHSPLWAT RPLGAELRQQ AVLEVVHLAT 1320 LWTGLIARLL ALPQELSQTR ADRLLSEHSV AAGAAAAPTA GAAAAAAAST AGRMRSGTAP 1380 VGVAAAERRL QHSIGALRAC TAAAVGDAVM LVRGVR*

Sequence ? help Back to Top

Protein Sequence Length: 1417 aa Download sequence Send to blast

MASALHVYAN LLWRDSKVEA RVKKLAALRL LQEPHYRLPL DELSRALVSS HDSTISGDLL  60
APARLADIIF AELCFVHSDG TGNVLLDAAS LMTAGKDCLK VYIDRVWDTS SPRSWAHNQL  120
AWYIVSRQHI DMRPHDLFLA PVDDAESFLA AAWTSRMDLR DHPDHPYTSL RQLLRGETRL  180
ELTPDLSAIR LNFSKLLQQD QQQYHQQTPP QQQQQLQAGG PSASGREHHG NGHDTATAAA  240
AAAAAGRGGD DDGGAMEWGE YGGEDGAYGN SEAAIDIAAD VAAAMAAMQR ASFANGLGGS  300
GRHGDAGNGV GNRDAEEYYE EAEECGDGGE GYGEDDDRET TRGRGFRGGG GGAAAAGGSR  360
YANGGGGGAA AAAASNNQPV LPLRPDLLQI YIRAVFAASG SPHDHLMAVV ALALADAGRG  420
GSAGHGGNRG LPFPGAIAPD THRFRLPLHR LVTHVRETAP HLLPPPPPPH HSGGNGGGGW  480
LAGALSQRLQ ERSSRGCFKV LLPGGGAGTG TTGTTATWGG EGGHGYGGGG DDVEAAVVSL  540
DLDVLRERVV EALAAAAAVV FSGSRPVDEI RRTAAVHLAS RTRPFAGRAH CVRLITLART  600
LGGELPPEVF DPNRLGGFER LVGSESSNNV MHVFRKAMPG LSPGHGEEVG PFITLNLGKL  660
LAGAGVRDLD SIMTGGRSGR GEGGGSGASW AGRGGGGGGV PEAAPPSPAT AASSSRTAAF  720
AAASSAASHS GGSRDPAQPA PQAQTQGSGH AGIGGSSSSH NSLPPPPSDA ALRQAVESLF  780
SLSESGRAAG AGAGSTEYAL AAAAAKRTAA LSLVKALHSQ QGGFLPLTRL SDIVINAVPG  840
SPDLERLLAA DPDLFEIQEA WYGGPRSVRL RASGVMARAA AAATTASGAG DATAATAVAN  900
GGSSHSSHTA GTSTAAAGTS DALPRRPNTM NCPYYMRYGT CGYGGSCKYN HPPLTPGQPP  960
EQQPAPAAAA AAAAAAAAAA AAVHGAGVQR TPSTAAAASY RHPQRQEQAQ AQNQHHQAAV  1020
PTAVAGQEAG SGGGGGGGAA AAPRLSLSTP EVKVVTTACT PDHLDMLQHC YAAPQVAVAC  1080
KVHRAAYNHH HHHQPHHNHH HHPMSASSSA VEVGQVCLVQ LYAPAVAAAT GAVAAGSGGA  1140
AGATRGSPGS VGAAVGGSAG AGGGGGSSMS PAPRWPATVY LVDPAAGEDK KGLLLPSLSP  1200
LLEDRAIPKI IYCSSEVVPY MPRIAPLYDI SVLHALIARA PHAMLGAPAA AAAAGGGGPG  1260
EAAAVAVPPL ASLLQQHGVV TAAGAAAATV APAHSPLWAT RPLGAELRQQ AVLEVVHLAT  1320
LWTGLIARLL ALPQELSQTR ADRLLSEHSV AAGAAAAPTA GAAAAAAAST AGRMRSGTAP  1380
VGVAAAERRL QHSIGALRAC TAAAVGDAVM LVRGVR*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002952818.1	0.0	hypothetical protein VOLCADRAFT_93596
TrEMBL	D8U2I9	0.0	D8U2I9_VOLCA; Uncharacterized protein
STRING	XP_002952818.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP12626	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	2e-08	C3H family protein

Link Out ? help Back to Top
Phytozome	Vocar.0052s0030.1.p