PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0053s0055.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family HB-other
Protein Properties Length: 248aa    MW: 27857.3 Da    PI: 8.4115
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0053s0055.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.65.1e-09167218654
                          S--HHHHHHHHHHHHH...SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox   6 tftkeqleeLeelFek...nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          +++ + l +L + +      +yp++ee+eeL +++gL  rq++ WF N+R +
  Vocar.0053s0055.1.p 167 KHSVDNLAVLTSWYTAhlvWPYPTKEEKEELGRQTGLAFRQISDWFNNQRRR 218
                          566666777777776423369*****************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.357159222IPR001356Homeobox domain
SuperFamilySSF466891.15E-15161223IPR009057Homeodomain-like
SMARTSM003895.8E-9161226IPR001356Homeobox domain
CDDcd000864.96E-12162223No hitNo description
Gene3DG3DSA:1.10.10.601.4E-19169222IPR009057Homeodomain-like
PfamPF059201.3E-14179218IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MQLKMAVTDP VNAATNFTRG QKKGCLRDVW KCTTDAAAVG VKIDPMSFME RAVGRLNMAH  60
NLHAHTIVRM DGSNPKSMDG SNPKSMDGSN PKSMDGSNPK SMDGSNPKSM DGSNPKSMDG  120
SNPKSMDGSN PKSGMCECEC ECECECDHKD AVEFWRHEIA NRKKSEKHSV DNLAVLTSWY  180
TAHLVWPYPT KEEKEELGRQ TGLAFRQISD WFNNQRRRHW VKHFGDRGAP ANREESERIL  240
RERRVIN*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP545189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-15KNOTTED1-like homeobox gene 3