PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0053s0056.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family HB-other
Protein Properties Length: 94aa    MW: 10936.6 Da    PI: 9.0444
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0053s0056.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.99.5e-1034662355
                         SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55
                         + ps +e+eeL +k+gLt +qV  WF N+R+++
  Vocar.0053s0056.1.p 34 PFPSDKEIEELRDKTGLTLSQVADWFSNKRQRY 66
                         569****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003895.0E-4873IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-171569IPR009057Homeodomain-like
SuperFamilySSF466893.59E-141672IPR009057Homeodomain-like
CDDcd000862.93E-92367No hitNo description
PfamPF059208.8E-112665IPR008422Homeobox KN domain
PROSITE profilePS5007110.3173469IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MTMHLLSMET SPKLLPTAAN TMLMNWYTAN LVWPFPSDKE IEELRDKTGL TLSQVADWFS  60
NKRQRYWMQF FNGRKPANRE ESALILREKG VID*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002953036.14e-40hypothetical protein VOLCADRAFT_93696
TrEMBLD8U2T51e-38D8U2T5_VOLCA; Uncharacterized protein
STRINGXP_002953036.12e-39(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP545189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.13e-11KNOTTED-like homeobox of Arabidopsis thaliana 7