PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0058s0025.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

WRKY

Protein Properties

Length: 1335aa MW: 136932 Da PI: 6.7124

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0058s0025.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	32.4	1.8e-10	1129	1162	4	39
SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEE CS WRKY 4 gynWrKYGqKevkgsefprsYYrCtsagCpvkkkve 39 +y+WrKYG K + g + rsY+rC++ Cp++ + e Vocar.0058s0025.1.p 1129 EYRWRKYGEKWIDG--MCRSYFRCSMLYCPARLRAE 1162 7*********99..69***********97665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00774	3.9E-8	1126	1205	IPR003657	WRKY domain
PROSITE profile	PS50811	10.682	1126	1206	IPR003657	WRKY domain
SuperFamily	SSF118290	4.45E-9	1127	1166	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.2E-8	1127	1165	IPR003657	WRKY domain
Pfam	PF03106	1.2E-7	1129	1165	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1335 aa Download sequence Send to blast
MALPDCSPHR CPLLAPAALT DASASSSALG ITSWLDAAPH PVPTLHTVVN TSPTDLRTSF 60 MVQYKSSTGH LHFASPDLNE ILLALLPKVA VSASTAPTAD SAAASPAAAA TAATTAAATP 120 TWTNSEGTTV AALTAPTMTA PHRPEILAED AWPTAFAAAK GARRGRCKLQ LQLNTELHVT 180 RHAARLEGLR PLMTRWGVRN KEMLTLTVRY DGRLLLSRQR PPGAAEAPAT TMVAVAAKAA 240 AVGSGVALQP EPAAAPPPVY LCRRRGSLLQ LPNEAVAWHF ADLAAAAVAA KGPQPVEGLW 300 AAVAGTPPPP QPGAQGHDED PRVALPQSGS LVELRGVSLC APKLGRCRIF ALQGLRTVMG 360 SWGLADGAMV QLQPCTTGNS SSHTSSSSGV QKLVLAPLRS TQVQATADPP GPIRNPAVAG 420 PSRATAAAAV TVGSVGSVGA SKGSALAGGN AAAAVASAGG AAGTLQDTPC DAVAVADGGG 480 VRVAVAGRRA AADAGGNGGG SGGGSTAFAT TATAPLALPQ ATAAPSQMAV AAPNPSSLST 540 SMLQPRHWPT VQYQQPQLQL QPLPPLTATK GVVEEAEETE NAMQVEEVQQ QPPPSESQSD 600 LVPAEAGQHL HWGHMPCDEL AMAVDSPSPL ETAGECTATE SAERLQQQQQ AGMSPLPPPP 660 PPGEVLQQPP PPAAAGMSPP TPLSELSPPP PPTADAAPPP LPPPDAADAS SLLLSFALLP 720 LSQPADTSPL PLLSSQAALS LPADVPSAPP PPPSLSEVPV GDPSPALRQP PLAGTAMSAL 780 PPAVRQPLPS EPGGARQGPL ASTDESLLPL LRDPGLARTA HVRHFLTAAT EVSPASPDSL 840 MLTPRGGGSC CSTEQLPWAV TEMAEADARL LLMVREAKED EGGEEVEAVN GQLEEVIGPL 900 SEIAAILLAE GISPVVLQQM LPPGQPASPP PQPPPPLPPR QLQEGVAFPT VPEVPEEARQ 960 WQPPLPLLPY AAAADGAVQP AAAIPAYDGH QWVALPGCAP PPPRRPGGSA GSGRAAAKRG 1020 PSSATAGSMY DNDWAPASSG RCTASGVATD VTHRRPSSKR RRKNDGTFKP SIPALANVQH 1080 IPAVQLPSSS PTLVQPLPPA CSLHRAVQPP PPPASRARFS VLGRDLPNEY RWRKYGEKWI 1140 DGMCRSYFRC SMLYCPARLR AEWRPSGGSG LGGSGGGGGE SGGGDANAGG FILWVSYDAP 1200 HNHPPPPPPP PQESEIPDRG RQQPSGEISP RATADPQEGH GGPPGTQLVS SSRTVVQDQA 1260 GGEPLPPPPP PRLICRCIRG SGRRGITWDL RRVRATWGFW RLSGAAAAAA EQPVVEMSVR 1320 KAPWITGMFG RTII*

Sequence ? help Back to Top

Protein Sequence Length: 1335 aa Download sequence Send to blast

MALPDCSPHR CPLLAPAALT DASASSSALG ITSWLDAAPH PVPTLHTVVN TSPTDLRTSF  60
MVQYKSSTGH LHFASPDLNE ILLALLPKVA VSASTAPTAD SAAASPAAAA TAATTAAATP  120
TWTNSEGTTV AALTAPTMTA PHRPEILAED AWPTAFAAAK GARRGRCKLQ LQLNTELHVT  180
RHAARLEGLR PLMTRWGVRN KEMLTLTVRY DGRLLLSRQR PPGAAEAPAT TMVAVAAKAA  240
AVGSGVALQP EPAAAPPPVY LCRRRGSLLQ LPNEAVAWHF ADLAAAAVAA KGPQPVEGLW  300
AAVAGTPPPP QPGAQGHDED PRVALPQSGS LVELRGVSLC APKLGRCRIF ALQGLRTVMG  360
SWGLADGAMV QLQPCTTGNS SSHTSSSSGV QKLVLAPLRS TQVQATADPP GPIRNPAVAG  420
PSRATAAAAV TVGSVGSVGA SKGSALAGGN AAAAVASAGG AAGTLQDTPC DAVAVADGGG  480
VRVAVAGRRA AADAGGNGGG SGGGSTAFAT TATAPLALPQ ATAAPSQMAV AAPNPSSLST  540
SMLQPRHWPT VQYQQPQLQL QPLPPLTATK GVVEEAEETE NAMQVEEVQQ QPPPSESQSD  600
LVPAEAGQHL HWGHMPCDEL AMAVDSPSPL ETAGECTATE SAERLQQQQQ AGMSPLPPPP  660
PPGEVLQQPP PPAAAGMSPP TPLSELSPPP PPTADAAPPP LPPPDAADAS SLLLSFALLP  720
LSQPADTSPL PLLSSQAALS LPADVPSAPP PPPSLSEVPV GDPSPALRQP PLAGTAMSAL  780
PPAVRQPLPS EPGGARQGPL ASTDESLLPL LRDPGLARTA HVRHFLTAAT EVSPASPDSL  840
MLTPRGGGSC CSTEQLPWAV TEMAEADARL LLMVREAKED EGGEEVEAVN GQLEEVIGPL  900
SEIAAILLAE GISPVVLQQM LPPGQPASPP PQPPPPLPPR QLQEGVAFPT VPEVPEEARQ  960
WQPPLPLLPY AAAADGAVQP AAAIPAYDGH QWVALPGCAP PPPRRPGGSA GSGRAAAKRG  1020
PSSATAGSMY DNDWAPASSG RCTASGVATD VTHRRPSSKR RRKNDGTFKP SIPALANVQH  1080
IPAVQLPSSS PTLVQPLPPA CSLHRAVQPP PPPASRARFS VLGRDLPNEY RWRKYGEKWI  1140
DGMCRSYFRC SMLYCPARLR AEWRPSGGSG LGGSGGGGGE SGGGDANAGG FILWVSYDAP  1200
HNHPPPPPPP PQESEIPDRG RQQPSGEISP RATADPQEGH GGPPGTQLVS SSRTVVQDQA  1260
GGEPLPPPPP PRLICRCIRG SGRRGITWDL RRVRATWGFW RLSGAAAAAA EQPVVEMSVR  1320
KAPWITGMFG RTII*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002959167.1	0.0	hypothetical protein VOLCADRAFT_100569
TrEMBL	D8UKI4	0.0	D8UKI4_VOLCA; Uncharacterized protein
STRING	XP_002959167.1	0.0	(Volvox carteri)

Link Out ? help Back to Top
Phytozome	Vocar.0058s0025.1.p