PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0060s0003.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

ERF

Protein Properties

Length: 1347aa MW: 132134 Da PI: 6.5726

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0060s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.6	8.4e-20	715	763	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp + +r +lg+f+taeeAa+a++aa+++++g Vocar.0060s0003.1.p 715 YRGVRQRP-WGKWAAEIRDP-----TvgARRWLGTFDTAEEAARAYDAAARAIRG 763 9*****.******9.....4459*********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	23.538	714	771	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.81E-22	714	773	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.1E-30	714	773	IPR001471	AP2/ERF domain
SMART	SM00380	7.5E-37	714	777	IPR001471	AP2/ERF domain
Pfam	PF00847	2.4E-12	715	763	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.0E-10	715	726	IPR001471	AP2/ERF domain
CDD	cd00018	1.48E-18	715	773	No hit	No description
PRINTS	PR00367	3.0E-10	737	753	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1347 aa Download sequence Send to blast
MGAPEAGTEG PPSASPPALV ADLSLADMPQ PGQVLQQGQQ DLSTNQGLQV VSSSTSPTGA 60 ASLSSTTTAQ TSSAQSTVAN FSLPNALSLY ASTQAQVGLP VSAPRPGIST PSPLLNASAA 120 ALQQTTATAA AYYNTLLRFP AGAPGAPGAS NVTPQQLAQQ AAAQGLRPIY SQPLSPHVLQ 180 AMQGLQAAQA QLHATAQANA VAQAAHAQAQ AQLQAAEAAK AAQQAQQQGT NGRATSPEAS 240 QASSTGGQGA AGGGTASPPP GLPGTMATAT GGPGGLATSG VPHTPAAAMQ ALATAQAALQ 300 AAQAQMAAAA AAAAAAAAGQ VQSQAAGQGG AGQGQPGQAP TPAQLQAQAS FQAQLAAAHL 360 VSRNAAAAAA AAGAAAGAQQ GLMRPPFSHG ALPLQQQAGA ASAATAGQQT IATVAQQHGA 420 LGPVPGPRPL TPHVASTSAA GPGLTQHGVA PSIASQAAAA AAAAAAAAAG QQGSRPPTPP 480 PALAPPGPVA AAAGAPSAAS STASHGHLQV GQSGPSAMSA QTPGAAATAQ SQPLGLASLS 540 QQHQSQQPQQ QPTATTTTAA AVAPVAVGNG EGQLPPGGLC SGPVLVDEQM QQQAQQQLQL 600 QQLQQQQAQH LQQMQQMHQM QMQQMQMQQM QQMQQQMHQQ MHQMQQLPMH QMHQMPPPPP 660 PPPAIPDEDE STDESEGDTT SPRKRREKKK SHRGGGGGGG GMGDEVVSKG KNKTYRGVRQ 720 RPWGKWAAEI RDPTVGARRW LGTFDTAEEA ARAYDAAARA IRGPAARCNF PLSAADDSHH 780 YHHNLEVQAS ATVSGGAGQD TRAMMGPAGG PGMGALSNGN PGQMGGGGAG GGPSSSGSQG 840 PVGPGQMGMG GPMGPLGGPE DASLMGGLPP QVDLPKGSGF PNLGSDAPAG KPHTTLRLKQ 900 KGPKAGAKRT GMDDALIQAA MHGGLGAADI HGAMSVSEAM AAAGAVGPLL GPLPGLNGGS 960 PSSFPHMKVQ TGLTPNFSGW HGPIPSFGSS GMMGALLPEW PPGGSIGSAA SMMMLGMSPG 1020 GELGMSYGNT YGKSVDMLDM CAQLMEAGVV DPLSNLGSLR NELMLPADFK NESVRPGGDG 1080 ELDEHEHELD EMMILGTTPD FARTPTDHFF RSPGLHHGFP MSGMGLFHLA GSGGGAVAAS 1140 PGPLAKAAPP PPSGGGSKAA SGSGSGLGGV AGGGVGSGSG LGAGAFGSRG TSPPSEGNGP 1200 GAVGAPSGQL GSPRGAFHSH HHHLIQADPL LGMGRLSDGE EPNNGCADDE DEDDELMGMS 1260 PDVQTLKSNG PFIRQPGFGT FLKQQVARGA LAAAAGGPPL VAGGSGSGGG SGGGGGSGGG 1320 GCSSGNSGDL PPSLSFAAGI GDSPLL*

Sequence ? help Back to Top

Protein Sequence Length: 1347 aa Download sequence Send to blast

MGAPEAGTEG PPSASPPALV ADLSLADMPQ PGQVLQQGQQ DLSTNQGLQV VSSSTSPTGA  60
ASLSSTTTAQ TSSAQSTVAN FSLPNALSLY ASTQAQVGLP VSAPRPGIST PSPLLNASAA  120
ALQQTTATAA AYYNTLLRFP AGAPGAPGAS NVTPQQLAQQ AAAQGLRPIY SQPLSPHVLQ  180
AMQGLQAAQA QLHATAQANA VAQAAHAQAQ AQLQAAEAAK AAQQAQQQGT NGRATSPEAS  240
QASSTGGQGA AGGGTASPPP GLPGTMATAT GGPGGLATSG VPHTPAAAMQ ALATAQAALQ  300
AAQAQMAAAA AAAAAAAAGQ VQSQAAGQGG AGQGQPGQAP TPAQLQAQAS FQAQLAAAHL  360
VSRNAAAAAA AAGAAAGAQQ GLMRPPFSHG ALPLQQQAGA ASAATAGQQT IATVAQQHGA  420
LGPVPGPRPL TPHVASTSAA GPGLTQHGVA PSIASQAAAA AAAAAAAAAG QQGSRPPTPP  480
PALAPPGPVA AAAGAPSAAS STASHGHLQV GQSGPSAMSA QTPGAAATAQ SQPLGLASLS  540
QQHQSQQPQQ QPTATTTTAA AVAPVAVGNG EGQLPPGGLC SGPVLVDEQM QQQAQQQLQL  600
QQLQQQQAQH LQQMQQMHQM QMQQMQMQQM QQMQQQMHQQ MHQMQQLPMH QMHQMPPPPP  660
PPPAIPDEDE STDESEGDTT SPRKRREKKK SHRGGGGGGG GMGDEVVSKG KNKTYRGVRQ  720
RPWGKWAAEI RDPTVGARRW LGTFDTAEEA ARAYDAAARA IRGPAARCNF PLSAADDSHH  780
YHHNLEVQAS ATVSGGAGQD TRAMMGPAGG PGMGALSNGN PGQMGGGGAG GGPSSSGSQG  840
PVGPGQMGMG GPMGPLGGPE DASLMGGLPP QVDLPKGSGF PNLGSDAPAG KPHTTLRLKQ  900
KGPKAGAKRT GMDDALIQAA MHGGLGAADI HGAMSVSEAM AAAGAVGPLL GPLPGLNGGS  960
PSSFPHMKVQ TGLTPNFSGW HGPIPSFGSS GMMGALLPEW PPGGSIGSAA SMMMLGMSPG  1020
GELGMSYGNT YGKSVDMLDM CAQLMEAGVV DPLSNLGSLR NELMLPADFK NESVRPGGDG  1080
ELDEHEHELD EMMILGTTPD FARTPTDHFF RSPGLHHGFP MSGMGLFHLA GSGGGAVAAS  1140
PGPLAKAAPP PPSGGGSKAA SGSGSGLGGV AGGGVGSGSG LGAGAFGSRG TSPPSEGNGP  1200
GAVGAPSGQL GSPRGAFHSH HHHLIQADPL LGMGRLSDGE EPNNGCADDE DEDDELMGMS  1260
PDVQTLKSNG PFIRQPGFGT FLKQQVARGA LAAAAGGPPL VAGGSGSGGG SGGGGGSGGG  1320
GCSSGNSGDL PPSLSFAAGI GDSPLL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	7e-19	713	772	1	61	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	682	687	RKRREK
2	687	691	KKKSH
3	1304	1316	SGSGGGSGGGGGS

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP132	15	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33710.1	6e-15	ERF family protein

Link Out ? help Back to Top
Phytozome	Vocar.0060s0003.1.p