PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

Vocar.0067s0020.1.p

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

Protein Properties

Length: 250aa MW: 26084.9 Da PI: 4.1462

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0067s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	55	1.9e-17	10	111	3	97
NF-YB 3 eqdrflPianvsrimkkvlPanak.......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 e+d +P a + ri+k l a a iskda + e fis+++s a+d cq+++r t+n+dd++ al +l f + v+plk Vocar.0067s0020.1.p 10 ETDVDVPRALIKRIVKAKLSALAEdeskdfgISKDALTALSESTKVFISLIASTANDICQEKRRSTVNADDVFNALQDLDFSELVAPLKE 99 67888999******999875533333666******************************************************* PP NF-YB 86 ylkkyrelegek 97 l+ ++e+ +e+ Vocar.0067s0020.1.p 100 QLEAFKEAVKER 111 *****98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.0E-31	5	146	IPR009072	Histone-fold
SuperFamily	SSF47113	5.33E-24	12	123	IPR009072	Histone-fold
Pfam	PF00808	2.0E-10	15	85	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MDTSATEKPE TDVDVPRALI KRIVKAKLSA LAEDESKDFG ISKDALTALS ESTKVFISLI 60 ASTANDICQE KRRSTVNADD VFNALQDLDF SELVAPLKEQ LEAFKEAVKE RNKNRPSKKR 120 KNTVDAQVAV PRNLKQQQYM AQHQNQHAAV AAAPADADAD AVGGVGEVLD GGHGSVVDAG 180 GEPDELQHDA AALDADVTAD VLGGPADDDG LGGLGMGMGL GLVDSDPTCL GDPSDVGVEV 240 EDMLVDAPP*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002951737.1	1e-178	hypothetical protein VOLCADRAFT_105243
TrEMBL	D8TZI6	1e-177	D8TZI6_VOLCA; Uncharacterized protein
STRING	XP_002951737.1	1e-178	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3453	13	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	9e-25	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Phytozome	Vocar.0067s0020.1.p