PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0078s0012.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family GATA
Protein Properties Length: 460aa    MW: 46095.4 Da    PI: 6.2212
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0078s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.51.3e-16368402135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C +Cg+t++p+WRrgp  +++LCnaCG ++r++++
  Vocar.0078s0012.1.p 368 CDHCGATESPQWRRGPPAKPMLCNACGTRFRRTNQ 402
                          9***************99999**********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.14E-11361406No hitNo description
PROSITE profilePS5011412.242362405IPR000679Zinc finger, GATA-type
SMARTSM004018.7E-10362414IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.4E-12363406IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.08E-12367406No hitNo description
PfamPF003207.8E-14368402IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MSPAPANESV PALSPFFTTS TAAAPLAERD CNGAFACPVV SKAPTAACGM RRGASFLDAD  60
DACLALSDKT SFLIPEDSYL PGQENFAVVP TVLPTACCRA PCPFPSAGAV RLPFPNVHIT  120
TTHVATARSH MPTPFLLLDT PVFGGEEEFA AAPVCFEKAV QALEMVDRPT VLVDPAGGCL  180
AATAHHDACG PHPGAQNDPT SGDPDGHGGR RPSGTNFELQ EQQQQQTPNL QAARRVSSLA  240
PSPPASQLTG SAGDHFFPAL PYDQTASAAD SECADAAESG GPSFWQPQAP HLDESAAATA  300
AAAATEPANT AAGGCPIGAL TGAAGADAAA SSGGAALQDG AVPAAPAPPA AAAAVVVRAF  360
HHKTGGPCDH CGATESPQWR RGPPAKPMLC NACGTRFRRT NQLNPAVAIA PAGRATAAAS  420
MAGGGGAAST AAKRNAAAKR DPPYIASTSV KRGRSSSGY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002958009.10.0hypothetical protein VOLCADRAFT_99159
TrEMBLD8UH500.0D8UH50_VOLCA; Uncharacterized protein
STRINGXP_002958009.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4501526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.12e-11GATA transcription factor 26