PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0007s01160.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CPP
Protein Properties Length: 259aa    MW: 28635.4 Da    PI: 6.6306
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0007s01160.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR22.91.8e-0750721638
                TCR 16 kYCeCfaagkkCseeCkCedCkN 38
                        Y eCfaag++C e C+C+dC+ 
  Vradi0007s01160.1 50 SYSECFAAGVYCIEPCSCQDCHE 72
                       699******************86 PP
2TCR46.57.4e-15117154239
                TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                        +k+g nCkks ClkkYCeC++ g+ Cs  C+Ce+CkN 
  Vradi0007s01160.1 117 HKRGRNCKKSICLKKYCECYQGGVGCSIGCRCEGCKNA 154
                        78899********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163425.49340156IPR005172CRC domain
PfamPF036381.4E-45072IPR005172CRC domain
SMARTSM011146.0E-14116157IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-10121154IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MTSHEVERQV KIALDWLRGN RVEYRRFAAV LILKNYAVYN NPQLYLWTAS YSECFAAGVY  60
CIEPCSCQDC HEDTVFQTRK QIESQNPLAF APKVIRSSDS VLEIGDDPNK TPASARHKRG  120
RNCKKSICLK KYCECYQGGV GCSIGCRCEG CKNAFGRKGS APVSIETEQE ETEATDKGMA  180
EKASQKTEIQ NTEDHPDSAT VSTPLRLSRE VLILINSDAS HNFISQGLVE EMGLVVVDTP  240
SYLVSLGDGQ KKTRGCCE*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0007s01160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3786451e-85AB378645.1 Lotus japonicus CPP-L56 mRNA for transcription factor CPP, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491017.11e-113protein tesmin/TSO1-like CXC 2 isoform X2
SwissprotF4JIF57e-61TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBLA0A1S3TB711e-112A0A1S3TB71_VIGRR; protein tesmin/TSO1-like CXC 2 isoform X2
STRINGXP_007157112.18e-93(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.13e-63TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]