PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0007s01720.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 209aa    MW: 23336 Da    PI: 10.1202
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0007s01720.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-053153123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ C+k Fs++  L  H++ H
  Vradi0007s01720.1 31 FSCNFCKKEFSSSQALGGHQNAH 53
                       89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.93E-72858No hitNo description
Gene3DG3DSA:3.30.160.604.5E-52957IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.7593158IPR007087Zinc finger, C2H2
PfamPF139121.9E-53155IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
METGSSSSRE TYPKRRDDHN NEVKSSKTKT FSCNFCKKEF SSSQALGGHQ NAHKQERALA  60
KGHQGIEVGA FGHLHFLYYP YLRNSFYGSY SRTLGIQMES MIHKPSYRSS SLGFRFDHHS  120
SLDGLRKKDL NANNKIMSME SDTTLRKQGD NLTIRQNTPF LSKSSTNVAI KSNSTLSPLT  180
TVHFDGQSKL EGTPNLNSSY GIDLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0007s01720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491074.11e-152zinc finger protein 3-like
TrEMBLA0A1S3TBC81e-151A0A1S3TBC8_VIGRR; zinc finger protein 3-like
STRINGGLYMA04G15560.21e-72(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.13e-22C2H2 family protein