PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0007s01900.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 250aa    MW: 28248.4 Da    PI: 8.1576
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0007s01900.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.23.9e-3193183193
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +CaaCk +r+kC++dC++apyf ++q +  fa+vhk+FGa+n++kll +++e +r+++++sl+yeA+ r+ +Pv+G+v+ ++    +l+ ++
  Vradi0007s01900.1  93 PCAACKKMRKKCSSDCIFAPYFGSSQgSTLFAAVHKVFGANNLSKLLLEVEEIHRNETINSLCYEAQTRLANPVHGCVASLQ---GELAMVQ 181
                        7*********************99997899***********************************************97554...4444444 PP

             DUF260  92 ae 93 
                        ++
  Vradi0007s01900.1 182 NQ 183
                        44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.74292194IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-3093184IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MWQQPRSNFN LIIILIENFF LFLFHLVHET VFRFVIWFHQ EGTRDGENGD MVVAACKRSC  60
IEKLSMANEA QANVEKQKSK VSKCVRSRAS SPPCAACKKM RKKCSSDCIF APYFGSSQGS  120
TLFAAVHKVF GANNLSKLLL EVEEIHRNET INSLCYEAQT RLANPVHGCV ASLQGELAMV  180
QNQLINTQNL YESLLQRTYH QQQPNINVVV QPSANNVMNM SYFNPAFDHL SMQTTPSTVN  240
MDPPQYFFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-229318911102LOB family transfactor Ramosa2.1
5ly0_B1e-229318911102LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0007s01900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-159AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491067.11e-132LOB domain-containing protein 20
TrEMBLA0A1S3TBC91e-130A0A1S3TBC9_VIGRR; LOB domain-containing protein 20
STRINGXP_007162000.19e-94(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2850733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-35LOB domain-containing protein 20