PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0023s00350.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 197aa    MW: 21733.3 Da    PI: 6.5195
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0023s00350.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.67e-2577128252
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEE CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitY 52 
                        +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers  d  v+   Y
  Vradi0023s00350.1  77 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSPGDAAVLLSQY 128
                        69*************************998**************99998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-2469129IPR003657WRKY domain
SuperFamilySSF1182905.62E-2172129IPR003657WRKY domain
SMARTSM007741.1E-2776136IPR003657WRKY domain
PROSITE profilePS5081125.83277137IPR003657WRKY domain
PfamPF031063.4E-2078129IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MYHRRFNKPI QVANPDEPEP EPEPTSEPGP ASPSSCDDTK TEAPSPKKRR EIKKRVVTIP  60
IGDVDGSKSK GETYPPSDSW AWRKYGQKPI KGSPYPRGYY RCSSSKGCPA RKQVERSPGD  120
AAVLLSQYHF RWFDDVASTG VLESPICGEV DDVAMPMREE DESLFADLDE LPECSVVFRR  180
GNIPRSSAIR CGGITG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-16771281565WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0023s00350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195871e-132EU019587.1 Glycine max WRKY52 (WRKY52) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016171815.14e-95probable WRKY transcription factor 69 isoform X2
SwissprotQ93WV56e-48WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBLV7BXD16e-72V7BXD1_PHAVU; Uncharacterized protein
STRINGXP_007149724.11e-72(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.26e-47WRKY DNA-binding protein 69
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]