PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0023s00860.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

FAR1

Protein Properties

Length: 117aa MW: 13137.3 Da PI: 10.1155

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0023s00860.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	30.1	1.6e-09	9	90	7	90
FAR1 7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 A ++GF v++ +s + ++ ++ t + C ++gk ++ k++ +++++ +Ck+ +k++ + + w+++ + HnHela Vradi0023s00860.1 9 AFQLGFVVVIVRSDTAtDEPERKTFVVLGCERSGKYRKYKQD----VQPSVSGTRKCKCPFKLRGKPkGHGWVLKVMCGYHNHELA 90 7899***99988872444445566667**9998777....8999999999999999999986788***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-7	9	90	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MIDWVRKIAF QLGFVVVIVR SDTATDEPER KTFVVLGCER SGKYRKYKQD VQPSVSGTRK 60 CKCPFKLRGK PKGHGWVLKV MCGYHNHELA ETLVGHPYAG RLNAAEQSIL IDMTKS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0023s00860.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	1e-101	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
GenBank	AP015044	1e-101	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014521959.1	1e-83	uncharacterized protein LOC106778497
TrEMBL	A0A1S3VV74	3e-82	A0A1S3VV74_VIGRR; uncharacterized protein LOC106778497
STRING	XP_007139082.1	3e-40	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF180	11	22