PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0043s00800.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 259aa    MW: 28403.8 Da    PI: 10.0365
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0043s00800.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2673.6e-21109159256
                AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                        +y+GVr+++ +g+W+AeIrd +     + +r++lg+f+tae Aa+a+++a+++++g+
  Vradi0043s00800.1 109 KYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEAAARAYDEAALRFRGN 159
                        8********.**********66.....56*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.1E-33108167IPR001471AP2/ERF domain
PROSITE profilePS5103225.686109166IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-23109167IPR016177DNA-binding domain
SMARTSM003801.0E-36109172IPR001471AP2/ERF domain
PfamPF008471.2E-14109158IPR001471AP2/ERF domain
CDDcd000181.92E-23109168No hitNo description
PRINTSPR003675.1E-12110121IPR001471AP2/ERF domain
PRINTSPR003675.1E-12132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSAMVSALTH VVTGEVPKST DSAFLHDNHA VTPHVPSSAS TTPSNYVLGT SSHKRAREQD  60
ASCFSQTSSM PRSGECSNNS RSRITREMGN AVYEYKTTEN VRGDEERRKY RGVRQRPWGK  120
WAAEIRDPFK AARVWLGTFD TAEAAARAYD EAALRFRGNK AKLNFPENVT LRQPQFSVSN  180
SSTSLVSIST STDPVVHTPS FLPSQARIPG ITLITIKVMQ NSDHTDFCTA RNNVSGQSKE  240
KTNVPPFGKH LALCLVVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-24108169163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0043s00800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014489970.11e-150ethylene-responsive transcription factor ABR1-like isoform X2
TrEMBLA0A1S3T8811e-149A0A1S3T881_VIGRR; ethylene-responsive transcription factor ABR1-like isoform X2
STRINGXP_007137573.11e-107(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.15e-23related to AP2 6