PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0051s00060.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 249aa    MW: 27890 Da    PI: 4.4662
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0051s00060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.5e-0916411744
                       HHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
    Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrw 44
                       +q+G++ W++Ia+ +  gRt++++k++w
  Vradi0051s00060.1 16 AQFGNR-WAKIASFLS-GRTDNDVKNFW 41
                       79****.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.377149IPR017930Myb domain
CDDcd001673.90E-61341No hitNo description
SuperFamilySSF466892.73E-71552IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-101543IPR009057Homeodomain-like
PfamPF002491.3E-61541IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MQVFTRGRED CDRVQAQFGN RWAKIASFLS GRTDNDVKNF WSSRQKRLAR ILQTSGTTSK  60
SQKNKTKVPT LLDVPTLEAP KFSSSSEGES SSKPQSYSLP LIENSEVIKM VSLPDLIKSE  120
LPSSDPIHVE QGFNPFASYN SSEQIQQTSF PQIPELQNDL TFPMGSQDVL ARIDESYFVD  180
DYCALDDASE FGIGLQHPIG FPFFEPPGSC RIEARDTIDR FKSSDSFFDD FPMDMFDHID  240
PPASPSYL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0051s00060.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515433.21e-156transcription factor DUO1
TrEMBLA0A1S3VAQ91e-154A0A1S3VAQ9_VIGRR; transcription factor DUO1
STRINGXP_007134506.11e-138(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36933164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.15e-17MYB family protein