PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0051s00220.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 96aa    MW: 10396.2 Da    PI: 11.3453
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0051s00220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.21.8e-071031223
                       ---SHHHHHHHHHHHHHHHHHH CS
             SRF-TF  2 rienksnrqvtfskRrngilKK 23
                       +i n+s r+ tf kR++g++KK
  Vradi0051s00220.1 10 FIVNDSARKATFKKRKKGLMKK 31
                       799******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.7E-8131IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.283131IPR002100Transcription factor, MADS-box
PfamPF003192.3E-61031IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MTRKKVKLAF IVNDSARKAT FKKRKKGLMK KNLKDINRRI EVLTKNAQSQ TQVAAPAVTD  60
VAAKIEDKGQ GSHSGQGFAA ITLESIFGFK SGFSI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFIVNDSARKATFKKRK
22125KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0051s00220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-64AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418120.11e-25PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A0L9U9N32e-24A0A0L9U9N3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RZW82e-24A0A0S3RZW8_PHAAN; Uncharacterized protein
STRINGXP_007163366.12e-23(Phaseolus vulgaris)