PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0070s00130.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

FAR1

Protein Properties

Length: 881aa MW: 99717.3 Da PI: 6.9893

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0070s00130.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.1	3.9e-15	61	134	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYneYA+++GFs ++s+ +sk +ge r+fvC +eg r+ +++ C+a+++++++ ++kw+vtkl++eH+H+l+ Vradi0070s00130.1 61 FYNEYARHMGFSSKVSSYGHSKIDGE-NYREFVCGREGLRKGLNES--------------CNAMIRIELKGQNKWVVTKLVKEHTHSLF 134 9********************995.6689****9997766..............*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-11	61	134	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.8E-29	274	366	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.424	552	588	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.6E-11	552	586	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.6E-8	563	590	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 881 aa Download sequence Send to blast
MDVQVINAEG SGHQSKADNG DAEPSDSEVN NTEKYGTHGE DRISEPYVGM EFDTVDVAKA 60 FYNEYARHMG FSSKVSSYGH SKIDGENYRE FVCGREGLRK GLNESCNAMI RIELKGQNKW 120 VVTKLVKEHT HSLFSSSKAF NNNPSKHFSS VGRTMPETYQ GVGLVPSGVM YVSMDGNRVS 180 NQNTRGMKNI HTTPAERSHP VKNSSLMNYT VRPSLQNRTL GRDAHNLLEY FKKMQAENPG 240 FFYAIQLDED NRMSNVFWAD ARSRTAYSYY GDTVHLDTTY KVNQYRVPFA PFTGVNHHGQ 300 MVLFGCALLL DDSEASYLWL LKTFLTAMND CQPVSITTDQ DRALQTAVSQ VLPQTRHCIS 360 KWHILREGQE KLAHVCLVHP NFQVELYNCI NLTETIDEFE SFWSCIIDKY DLRRNDWLQS 420 LYNARAQWVP AFFRNSFFAA LSPTQGFDGS FFDGYVNQQT TLPLFFRQYE RALESWIEKE 480 IEADFETVCT TPVLKTPSPM EKQVANLYTR KIFSKFQDEL VETFVYTANR IEGDGPNSTF 540 RVAKFEDDQK AYTVSLNHSE LKANCSCQMF EYSGILCRHI LTVFTVTNVL TLPPHYILKR 600 WTRNAKNSPR LDEHIGELHA QESLTARYSN LCKEAIRYAE EGAVTVETYN AAISGIREGG 660 KKVANVKRSV AKVSPPNNQA SGIAYDDRKT PTPTSDTTSL LWPRQDEITR RFNLNDSGGP 720 VQSVADLNLP RMAPVSLHRD DGPSENMVVL PCLKSMTWIM ENKTSTPGNK VAVINLKLQD 780 YSRVPSTESE VKFHLSRVTL EPMLKSMAYI SEQLSTPANK VAVINLKLQD TETTSGESEV 840 KFQVSRDTLG AMLRSMAYIR EQLSHADDAQ LEPLSKKHKK *

Sequence ? help Back to Top

Protein Sequence Length: 881 aa Download sequence Send to blast

MDVQVINAEG SGHQSKADNG DAEPSDSEVN NTEKYGTHGE DRISEPYVGM EFDTVDVAKA  60
FYNEYARHMG FSSKVSSYGH SKIDGENYRE FVCGREGLRK GLNESCNAMI RIELKGQNKW  120
VVTKLVKEHT HSLFSSSKAF NNNPSKHFSS VGRTMPETYQ GVGLVPSGVM YVSMDGNRVS  180
NQNTRGMKNI HTTPAERSHP VKNSSLMNYT VRPSLQNRTL GRDAHNLLEY FKKMQAENPG  240
FFYAIQLDED NRMSNVFWAD ARSRTAYSYY GDTVHLDTTY KVNQYRVPFA PFTGVNHHGQ  300
MVLFGCALLL DDSEASYLWL LKTFLTAMND CQPVSITTDQ DRALQTAVSQ VLPQTRHCIS  360
KWHILREGQE KLAHVCLVHP NFQVELYNCI NLTETIDEFE SFWSCIIDKY DLRRNDWLQS  420
LYNARAQWVP AFFRNSFFAA LSPTQGFDGS FFDGYVNQQT TLPLFFRQYE RALESWIEKE  480
IEADFETVCT TPVLKTPSPM EKQVANLYTR KIFSKFQDEL VETFVYTANR IEGDGPNSTF  540
RVAKFEDDQK AYTVSLNHSE LKANCSCQMF EYSGILCRHI LTVFTVTNVL TLPPHYILKR  600
WTRNAKNSPR LDEHIGELHA QESLTARYSN LCKEAIRYAE EGAVTVETYN AAISGIREGG  660
KKVANVKRSV AKVSPPNNQA SGIAYDDRKT PTPTSDTTSL LWPRQDEITR RFNLNDSGGP  720
VQSVADLNLP RMAPVSLHRD DGPSENMVVL PCLKSMTWIM ENKTSTPGNK VAVINLKLQD  780
YSRVPSTESE VKFHLSRVTL EPMLKSMAYI SEQLSTPANK VAVINLKLQD TETTSGESEV  840
KFQVSRDTLG AMLRSMAYIR EQLSHADDAQ LEPLSKKHKK *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0070s00130.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014523684.1	0.0	protein FAR1-RELATED SEQUENCE 3-like isoform X1
Refseq	XP_014523685.1	0.0	protein FAR1-RELATED SEQUENCE 3-like isoform X1
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A1S3W076	0.0	A0A1S3W076_VIGRR; protein FAR1-RELATED SEQUENCE 3-like isoform X1
STRING	XP_007146047.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]