PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0083s00170.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 235aa    MW: 26875 Da    PI: 5.4861
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0083s00170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-182475556
                       SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        +f++ q++ Le++Fe ++ +  +++ eLA++lgL+ rqV +WFqN+Ra++k
  Vradi0083s00170.1 24 KRFSDGQVKSLESMFETDSRLEPAKKLELARELGLQPRQVAIWFQNKRARWK 75
                       57*************************************************9 PP
2HD-ZIP_I/II116.71.3e-3722113293
        HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                        +k+r+s+ qvk+LE++Fe++++Lep +K elareLglqprqva+WFqn+RAR+k+kq+ +dy++L+++y++l ++ ++L+ke +++ ++l++
  Vradi0083s00170.1  22 NKKRFSDGQVKSLESMFETDSRLEPAKKLELARELGLQPRQVAIWFQNKRARWKLKQVQRDYTTLRANYNTLDSRFDALNKEYQSMLTQLQD 113
                        69***********************************************************************************9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.7E-19775IPR009057Homeodomain-like
SuperFamilySSF466893.18E-18778IPR009057Homeodomain-like
SMARTSM003894.4E-161581IPR001356Homeobox domain
PROSITE profilePS5007117.0861777IPR001356Homeobox domain
CDDcd000862.00E-142378No hitNo description
PfamPF000465.0E-162375IPR001356Homeobox domain
PRINTSPR000313.3E-64857IPR000047Helix-turn-helix motif
PROSITE patternPS0002705275IPR017970Homeobox, conserved site
PRINTSPR000313.3E-65773IPR000047Helix-turn-helix motif
PfamPF021836.3E-1177119IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSDIEEYSHS SNAGTRNKRS INKKRFSDGQ VKSLESMFET DSRLEPAKKL ELARELGLQP  60
RQVAIWFQNK RARWKLKQVQ RDYTTLRANY NTLDSRFDAL NKEYQSMLTQ LQDLKNRLQK  120
PLEQTESCST LYKAANSMES EAGNGETVKR EQEIKQPCST AGRSEGIVRS VISDCDSSIK  180
AKQYFGVEDE ASLLSFVEIT DGSLTTPQHW GLLESDDIMG QLTGCDYQWW DFWS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0083s00170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-163AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022633575.11e-175homeobox-leucine zipper protein ATHB-12
TrEMBLA0A3Q0EPI31e-174A0A3Q0EPI3_VIGRR; homeobox-leucine zipper protein ATHB-12
STRINGXP_007147343.11e-139(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.11e-50homeobox 12