PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0083s00360.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 154aa    MW: 17486 Da    PI: 5.3356
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0083s00360.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.51.5e-4016114199
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaC++lrr+C ++C lapyfp ++ ++fa+vh++FGa+n++k++++++e +r+da++s+vyeA ar+rdPvyG++gvi +lq+++e+lka
  Vradi0083s00360.1  16 PCAACRMLRRRCDSKCELAPYFPTDEVENFAVVHRVFGARNIVKMIQTVEEAKRDDAVKSVVYEATARLRDPVYGSAGVIYELQKRIEELKA 107
                        7******************************************************************************************* PP

             DUF260  93 elallke 99 
                        +l+++k+
  Vradi0083s00360.1 108 QLDSIKT 114
                        **98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.18915116IPR004883Lateral organ boundaries, LOB
PfamPF031954.6E-4016113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MAFHADEAKT SMQHQPCAAC RMLRRRCDSK CELAPYFPTD EVENFAVVHR VFGARNIVKM  60
IQTVEEAKRD DAVKSVVYEA TARLRDPVYG SAGVIYELQK RIEELKAQLD SIKTRMSEMR  120
EEKEQLLSIG NNYDPLFGIF DSAMASDPFE FPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-32101165111LOB family transfactor Ramosa2.1
5ly0_B1e-32101165111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0083s00360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-104AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491445.11e-112LOB domain-containing protein 1
SwissprotQ9LQR04e-42LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A1S3TCG21e-110A0A1S3TCG2_VIGRR; LOB domain-containing protein 1
STRINGXP_007147329.13e-91(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF140681921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-44LOB domain-containing protein 1