PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0083s00810.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 187aa    MW: 20391.7 Da    PI: 4.6693
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0083s00810.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.6e-182878155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+ +l+g
  Vradi0083s00810.1 28 PVYRGVRKRR-WGKWVSEIREPRK---KNRIWLGSFPVPEMAARAYDVAAYCLKG 78
                       68*****887.**********854...59************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-122878IPR001471AP2/ERF domain
PROSITE profilePS5103223.7492986IPR001471AP2/ERF domain
SMARTSM003805.6E-352992IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-212988IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-312987IPR001471AP2/ERF domain
PRINTSPR003671.0E-123041IPR001471AP2/ERF domain
CDDcd000181.69E-303087No hitNo description
PRINTSPR003671.0E-126888IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MDHQPPPCPD DDLTAATTAT PRSGTRHPVY RGVRKRRWGK WVSEIREPRK KNRIWLGSFP  60
VPEMAARAYD VAAYCLKGRK AQLNFPDEVD SLPLPSSRTA RDIQAAAAQA ARMMKADGSD  120
VKSSIADDDG DSGGDDFWGE IELPELMDGE CCWGCPGGSS WSTSGDIAGW TEEEFSPQQP  180
SFLACL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-182490976Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0083s00810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491530.11e-135ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI21e-53ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A1S3TCP51e-134A0A1S3TCP5_VIGRR; ethylene-responsive transcription factor ERF023-like
STRINGXP_007147322.11e-104(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63752847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.11e-45ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]