PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0083s01070.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARF
Protein Properties Length: 750aa    MW: 83170 Da    PI: 6.3859
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0083s01070.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.94.4e-19154267198
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE...............EEETTEEEE-TTHHHHHHHH CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliy.............rkksgryvltkGWkeFvkan 72 
                        f k+lt sd++++g +++ +++a+e+       ++++++  +l  +d++g +W++k+i+             +++++r++lt+GW+ Fv ++
  Vradi0083s01070.1 154 FSKILTASDTSTHGGFSVLRRHATEClppldmtQSIPTQ--ELAAKDLHGFEWKFKHIFrgnfalifqvlfgEGQPRRHLLTTGWSTFVTSK 243
                        889***************************987666655..8***************99********************************* PP

                        T--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  73 gLkegDfvvFkldgrsefelvvkvfr 98 
                        +L +gD +vF   + +++el+v+v+r
  Vradi0083s01070.1 244 RLVAGDAFVFL--RGENGELRVGVRR 267
                        ***********..449999*****98 PP
2Auxin_resp96.83.1e-32293371183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha+ t+++F v+Y+Pr+  s+F++ ++k+++a+ +k+svGmRfkm+fe eds+err+sGt++gv d++p  W+nS+WrsLk
  Vradi0083s01070.1 293 ASHAFLTSTMFVVYYKPRT--SQFIIGLNKYLEAV-NKFSVGMRFKMRFEVEDSPERRFSGTIIGVGDVSP-GWRNSQWRSLK 371
                        679999************6..9*************.89*********************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.68E-38145296IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-36147282IPR015300DNA-binding pseudobarrel domain
CDDcd100179.45E-17152267No hitNo description
SMARTSM010194.6E-14154269IPR003340B3 DNA binding domain
PfamPF023623.0E-16154267IPR003340B3 DNA binding domain
PROSITE profilePS5086311.082154269IPR003340B3 DNA binding domain
PfamPF065078.9E-29293371IPR010525Auxin response factor
PfamPF023098.7E-6615663IPR033389AUX/IAA domain
SuperFamilySSF542772.03E-12623703No hitNo description
PROSITE profilePS5174523.982627708IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MAHLEAPVRT VSSSQPETGQ WLMLRGDFVD LALLGCLESV GDGDLYTQLW KLCAGPLVDV  60
PCEGERVFYF PQGHMEQLQA STNQGLNQEL SQQIPHFNLP SKILCRVVHI QLLAEQDTDE  120
VYARITLLPE SNQEEPTSPD PSPPETQKQS FHSFSKILTA SDTSTHGGFS VLRRHATECL  180
PPLDMTQSIP TQELAAKDLH GFEWKFKHIF RGNFALIFQV LFGEGQPRRH LLTTGWSTFV  240
TSKRLVAGDA FVFLRGENGE LRVGVRRVAR QQSPMPSSVI SSQSMHLGVL ATASHAFLTS  300
TMFVVYYKPR TSQFIIGLNK YLEAVNKFSV GMRFKMRFEV EDSPERRFSG TIIGVGDVSP  360
GWRNSQWRSL KVQWDEPAII PRPERVSSWE IEPFVASTAL NVIQPVVKSK RSRPEVSSSE  420
IGPNSPGAAL WYHGPSLSHD PTALGGTSEV QSNESPVIWC TRMKEINVNP MNGNKSSSNR  480
VRVEGMWPSS PHLSVSSNLF PDPKNSKAVT AQSTVSGYAP VSSRPNDDLA HDPVECGKRS  540
ENPMDCWVFG VNLTNNFTNV ALPDKELGCP PIIIPSGPKD SIPVAACETQ PGQNHNYSLS  600
NKLQKQIISD GSPSERHAKQ ATVPSTRTRT KVQMQGVAVG RAVDLTVLKD YEALIDELEK  660
IFDIKGELRM QTKWAITFTD DENDMMLAGD DPWPEFCSMA KRIFICSRED VKKLKSKHSG  720
CSSEGEETLL SQDSQNREET QQISCDLTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1604539419355Auxin response factor 1
4ldw_A1e-1604539419355Auxin response factor 1
4ldw_B1e-1604539419355Auxin response factor 1
4ldx_A1e-1604539419355Auxin response factor 1
4ldx_B1e-1604539419355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0083s01070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491597.10.0auxin response factor 18
RefseqXP_022633515.10.0auxin response factor 18
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A0L9VDB10.0A0A0L9VDB1_PHAAN; Auxin response factor
STRINGXP_007147325.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9