PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0083s01280.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 258aa    MW: 28737.5 Da    PI: 9.7255
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0083s01280.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-1790146148
                        TSSS-HHHHHHHHHHHHHTTTT..........-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..........tWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+WT+eEd++lv  ++++G g           W++Ia  ++ gRt++++k++w+++l
  Vradi0083s01280.1  90 KGPWTAEEDQILVSHIQRYGHGnwralpkqagKWSAIATSLP-GRTDNEIKNFWHTHL 146
                        79****************************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.55E-1685154IPR009057Homeodomain-like
PROSITE profilePS5129419.85785150IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-2389150IPR009057Homeodomain-like
SMARTSM007174.6E-1689148IPR001005SANT/Myb domain
PfamPF002493.4E-1590146IPR001005SANT/Myb domain
CDDcd001675.10E-1392146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDSKPVLFFF FIINGSAQNT NVFVVIRDWE NRKLGKKKSI RLKIVTSTSR GQWKEAAETY  60
RGKGHTLLCC AVKQAVTMKT PCCERMGMKK GPWTAEEDQI LVSHIQRYGH GNWRALPKQA  120
GKWSAIATSL PGRTDNEIKN FWHTHLKKRI QKSGVHINGN ASSHILQEAQ ANSSSSSSAV  180
SSAYGNVMID NYGLPSRKNP INPPIVGTGF YGAVPSDTFG ETEDNHDSCQ ISEEMEFWYN  240
IFIKSGQTSR DNENLGH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0083s01280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491522.11e-113transcription factor MYB4
RefseqXP_014491523.11e-113transcription factor MYB4
RefseqXP_022633556.11e-113transcription factor MYB4
RefseqXP_022633557.11e-113transcription factor MYB4
RefseqXP_022633558.11e-113transcription factor MYB4
TrEMBLA0A1S3TCM41e-112A0A1S3TCM4_VIGRR; transcription factor MYB4
STRINGXP_007147213.11e-100(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-31myb domain protein 14