PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0091s00170.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 249aa    MW: 27200.2 Da    PI: 6.6062
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0091s00170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00082164186123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++Cp C+++F +   L  H rtH
  Vradi0091s00170.1 164 HECPVCSRVFGSGQALGGHKRTH 186
                        79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.4E-6120137IPR007087Zinc finger, C2H2
SuperFamilySSF576671.71E-5160187No hitNo description
PROSITE profilePS501579.66164186IPR007087Zinc finger, C2H2
PfamPF139121.4E-12164186IPR007087Zinc finger, C2H2
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MRSHMMNLPV PPKESEFVPV QLSFEAESSP SQSSSSFYGL RENPKKSFRF ADPEFSFAAE  60
TGSVILQDRE SETESSKNPT RKRSKRAWQL GEPVKKMKLC GNNNKNESAS SASDTTAEEA  120
VFRSYQALGG HRASHKKMKL NSETEFQKAE LELEHVPVSE KKIHECPVCS RVFGSGQALG  180
GHKRTHVIGS SATHNTATVR TSATVSIGAS VRVGDSLIDL NLPAPVDDDE DISQFDHSAL  240
SDAEFVKE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0091s00170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490352.11e-117zinc finger protein ZAT9 isoform X1
TrEMBLA0A1S3T9A91e-116A0A1S3T9A9_VIGRR; zinc finger protein ZAT9 isoform X1
STRINGXP_007134733.12e-99(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-32C2H2-like zinc finger protein