PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0091s00210.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 486aa    MW: 53900.4 Da    PI: 6.9794
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0091s00210.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.8e-16322368455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn+ ErrRRd+iN+++ eL++l+P++      K +Ka++L ++++Y+k+Lq
  Vradi0091s00210.1 322 VHNQSERRRRDKINQRMKELQKLVPNS-----SKTDKASMLDEVIQYMKQLQ 368
                        6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.12318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-18320385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-14322368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-18322375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.30E-16323372No hitNo description
SMARTSM003531.2E-17324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MSQRVPSCDV DDNTGQPSTH EHTPANQTTW EIPRTSGTLE SIVNHGIAKN CLQLLTKDAL  60
VPSFPKQDTV FSAGKKGYPG RVESGVVARG PPTYELTGGK DSSMSGCDIC PRELSVTFNS  120
ATMGSPENTS SSAKQCTETT ANDYPRDSLS HRRSQIEFLQ LLDSGDDFFI THLSKSSQRR  180
QLLVKTTRAT VLTGEGAVVA DDLLSAADPS GDDELHTFGD LLRGLDGVDS LAELVDAAAN  240
QREGGANRRE VGFSEGKHEI GKLHFSVCFI GVVVFWVVLF RHLLSQFKNA NVVVSEVREE  300
DCKTSGVDRS CESNKRIKAS AVHNQSERRR RDKINQRMKE LQKLVPNSSK TDKASMLDEV  360
IQYMKQLQAH LQVMNWMKMY SSMMLPITMQ QQQLKMSMMM AQMGMGMRMS KDMAMNMNMN  420
MDMNMNNMNI PTIAPMLHLP PFMPMASCAD RLLAEPEKSE TVDAYSKMVA LYNQMYHPPD  480
SSSKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326331ERRRRD
2327332RRRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0091s00210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-179AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017441702.11e-110PREDICTED: transcription factor UNE10-like
TrEMBLA0A0L9VRY11e-108A0A0L9VRY1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SXT21e-108A0A0S3SXT2_PHAAN; Uncharacterized protein
STRINGXP_007134726.11e-102(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.16e-28bHLH family protein