PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0100s00670.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 238aa MW: 27154.5 Da PI: 6.3083

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0100s00670.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.5e-17	29	74	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia++++ +Rt++++k++w+++l Vradi0100s00670.1 29 RGKFSLQEEQTIIQLHALLGNR-WSAIASHLP-KRTDNEIKNYWNTHL 74 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.31	1	23	IPR017877	Myb-like domain
SuperFamily	SSF46689	5.82E-21	9	84	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.4E-11	9	36	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.622	24	78	IPR017930	Myb domain
SMART	SM00717	4.8E-17	28	76	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-16	29	74	IPR001005	SANT/Myb domain
CDD	cd00167	7.47E-12	31	74	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-22	37	75	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MGRPPCWLRR CGKSCRLRWT NYLRPDIKRG KFSLQEEQTI IQLHALLGNR WSAIASHLPK 60 RTDNEIKNYW NTHLKKRLEK MGIDPTTHKP KMESLIHFKD GSNLSHMAQW ESARLEAEAR 120 LVATVKEDGC CGGDGDSSES SWRYFTKHST DRDEEVMPCL QDDDIMVAVD ALRGGGYYGN 180 NDVVAMAFTP LSSNVNMAVG FSNEVQDFDS NQDLATENLE VHFEENKDYW NSMLGYK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-18	10	79	40	109	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269\|PubMed:18805951, ECO:0000269\|PubMed:21070410, ECO:0000269\|PubMed:23709630, ECO:0000269\|PubMed:24169067}.
UniProt	Involved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269\|PubMed:17376813, ECO:0000269\|PubMed:23709630, ECO:0000269\|PubMed:24169067}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0100s00670.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	7e-99	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022633932.1	6e-79	transcription factor MYB106-like
Swissprot	Q9LE63	5e-63	MY106_ARATH; Transcription factor MYB106
Swissprot	Q9LXF1	3e-63	MYB16_ARATH; Transcription factor MYB16
TrEMBL	A0A3Q0EUW1	1e-77	A0A3Q0EUW1_VIGRR; transcription factor MYB106-like
STRING	GLYMA02G12266.1	1e-70	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.2	2e-65	myb domain protein 16

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang BH, et al. Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae). Int J Mol Sci, 2015. 16(3): p. 5900-21 [PMID:25782156] Cui F, et al. Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation. Mol Plant, 2016. 9(6): p. 926-38 [PMID:27060495]