PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0108s00160.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 180aa    MW: 20872.2 Da    PI: 6.8996
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0108s00160.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-071081322347
                        -HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  23 tWktIartmgkgRtlkqcksrwqky 47 
                        +W++Ia++   gRt+ +c srw++y
  Vradi0108s00160.1 108 NWDLIASMYVGGRTGAECESRWLNY 132
                        9******9999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF530981.06E-63386IPR012337Ribonuclease H-like domain
CDDcd001678.81E-496132No hitNo description
Gene3DG3DSA:1.10.10.606.3E-12107151IPR009057Homeodomain-like
PfamPF139212.7E-6108150No hitNo description
SuperFamilySSF466892.42E-10115158IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MRMALKRLHA SIVAIITRNT TVSDVEKEYL EQKDKVKQMM SRIPNRICLT SDVWTAVTSE  60
GYICLTAHFV DENWKLTRQA NDMDNIIASV KDLEVTPERI RKFLPKVNWD LIASMYVGGR  120
TGAECESRWL NYEDPLINQG AWTKEEDKSL LLIVYMYQEL VRNCCIIGHK LYCIHVVWE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0108s00160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150384e-87AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
GenBankAP0150424e-87AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022633661.12e-67transcriptional activator Myb-like
TrEMBLA0A3Q0ERG55e-66A0A3Q0ERG5_VIGRR; transcriptional activator Myb-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74413344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.12e-22myb domain protein 4r1