PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0111s00010.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 569aa    MW: 62532 Da    PI: 8.21
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0111s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.93.2e-20120166148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+WT+eEd+++v++v+++G+  W++Ia+ ++ gR +kqc++rw+++l
  Vradi0111s00010.1 120 KGPWTQEEDDKIVELVTKYGPTKWSLIAQSLP-GRIGKQCRERWHNHL 166
                        79******************************.*************97 PP
2Myb_DNA-binding53.27e-17172215146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +++WT eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++
  Vradi0111s00010.1 172 KDAWTLEEELALMNAHRIHGNK-WAEIAKVLQ-GRTDNAIKNHWNS 215
                        679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.15755114IPR017877Myb-like domain
SMARTSM007176659116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-995126IPR009057Homeodomain-like
PROSITE profilePS5129432.548115170IPR017930Myb domain
SuperFamilySSF466894.49E-31117213IPR009057Homeodomain-like
SMARTSM007171.2E-17119168IPR001005SANT/Myb domain
PfamPF002491.8E-18120166IPR001005SANT/Myb domain
CDDcd001677.01E-16122166No hitNo description
Gene3DG3DSA:1.10.10.602.6E-27127173IPR009057Homeodomain-like
SMARTSM007172.1E-15171219IPR001005SANT/Myb domain
PROSITE profilePS5129422.299171221IPR017930Myb domain
PfamPF002494.8E-15172215IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-22174221IPR009057Homeodomain-like
CDDcd001674.79E-12174217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MAEVVKSEEC CQENKQSTAA SCSSVSEGSG SAIHKSPGIC SPASTSPSHR RTTGPIRRAK  60
GGWTAQEAYS LLVPATAARA CPFFFALSPL LTKGAEFFPD RSEVQCLHRW QKVLNPELVK  120
GPWTQEEDDK IVELVTKYGP TKWSLIAQSL PGRIGKQCRE RWHNHLNPEI KKDAWTLEEE  180
LALMNAHRIH GNKWAEIAKV LQGRTDNAIK NHWNSSLKKK LDFYLATGRL PPIPKSSPQV  240
PVKDTIRRSA SKSILVYSNK ELNAAVETSS ETTAISKLDD SGRNQFESSG TVREVGDSSS  300
VPANESADSD CVECKPGSSN IDLSCSNSEQ VSKANWAITY GPRPDNSGLN GNSTFEHCTN  360
NGNMNTTRLI GTSLHESPTC GSLCYEPPQL HGSVPIDSLY LNYICQQNEF CSSPTLSPLG  420
FFTPPRVKGD ELCTETPESI LKRAANTFPN TPSILRRRKT GFQALTSPSK VLKVDNDTRS  480
SNETERTNDD SGSRHFSSSP ASHGNVIDIP SNKTFNASPP YRLRSKRTGI VKSVEKQLEF  540
AFDKEKNDDK RSNIMTEDCL HEKKLVAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-619522133159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-619522133159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0111s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014492068.10.0transcription factor MYB3R-3 isoform X1
TrEMBLA0A1S3TE830.0A0A1S3TE83_VIGRR; transcription factor MYB3R-3 isoform X1
STRINGXP_007140316.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66163449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.21e-131myb domain protein 3r-3