PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0111s00320.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 142aa    MW: 16028.5 Da    PI: 10.0373
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0111s00320.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS48.31.7e-15383181
               GRAS  1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81
                       l++lLl cA+ v ++d + a++lL ++++++sp gd+ q++a+yft++L a+l++ +s+  k ++  ++++ + +e l+a+
  Vradi0111s00320.1  3 LRNLLLMCAQSVYANDIRVATELLMQIRKHSSPFGDASQKVAHYFTNGLDAHLVGAGSGGHKHFSFLNSQRITAAEYLKAY 83
                       689****************************************************99999999988888877777777766 PP
2GRAS26.57.3e-0982127122165
               GRAS 122 GlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerL 165
                          QWp L++ L+++++gpp+lRiT ++ p++    +e++ee+g+ L
  Vradi0111s00320.1  82 AYQWPILIKFLSNKEGGPPKLRITWIEFPQPRfrPSERTEEMGHVL 127
                        68****************************999999******9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.4381141IPR005202Transcription factor GRAS
PfamPF035145.9E-13383IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MDLRNLLLMC AQSVYANDIR VATELLMQIR KHSSPFGDAS QKVAHYFTNG LDAHLVGAGS  60
GGHKHFSFLN SQRITAAEYL KAYQWPILIK FLSNKEGGPP KLRITWIEFP QPRFRPSERT  120
EEMGHVLLTI KRTELSALTF N*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0111s00320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-99AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493671.13e-66scarecrow-like protein 34
SwissprotQ9XE583e-30SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A1S3TIU17e-65A0A1S3TIU1_VIGRR; scarecrow-like protein 34
STRINGXP_007132054.16e-59(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-32SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]