PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0111s00350.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 70aa    MW: 7853.09 Da    PI: 9.877
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0111s00350.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY35.81.6e-114969222
                       --SS-EEEEEEE--TT-SS-E CS
               WRKY  2 dDgynWrKYGqKevkgsefpr 22
                       dDgy+WrKYGqK++k+s++pr
  Vradi0111s00350.1 49 DDGYKWRKYGQKSIKNSPNPR 69
                       8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081112.614369IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.0E-104669IPR003657WRKY domain
SuperFamilySSF1182908.89E-94669IPR003657WRKY domain
PfamPF031066.7E-84969IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MVESAMSKTM MEEVMGTWSE GVSILERGLS KIENKYTLKI KCFGNGMGDD GYKWRKYGQK  60
SIKNSPNPR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0111s00350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150375e-75AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027929760.19e-29probable WRKY transcription factor 49
SwissprotQ9FHR75e-16WRK49_ARATH; Probable WRKY transcription factor 49
TrEMBLA0A371FUZ62e-27A0A371FUZ6_MUCPR; Putative WRKY transcription factor 49 (Fragment)
STRINGGLYMA07G16040.22e-27(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71183449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.12e-18WRKY DNA-binding protein 49