PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0129s00080.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 216aa    MW: 22916.1 Da    PI: 8.1472
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0129s00080.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.4e-091181027
                       GGTS--TTTTT-SS-SSS CS
            zf-CCCH 10 artGtCkyGdrCkFaHgp 27
                       ++tG Ck+G++CkF+H++
  Vradi0129s00080.1  1 MKTGKCKFGASCKFHHPK 18
                       89**************96 PP
2zf-CCCH41.81.8e-137194326
                       S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                       ++ C+f+++tG CkyG++C+++H+
  Vradi0129s00080.1 71 EVDCPFYMKTGSCKYGATCRYNHP 94
                       689********************9 PP
3zf-CCCH42.31.3e-13164187427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        ++C+++++tGtCk+G++CkF H+p
  Vradi0129s00080.1 164 VICPYYLKTGTCKFGATCKFDHPP 187
                        69********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035634118IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.751119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-4217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6716896IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-76895IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-117194IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-67295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-57493IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5160187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.488161188IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6164187IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-11164187IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-6165185IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MKTGKCKFGA SCKFHHPKDI LIQSSHELSH TAAQTEINSM IGGALGDTQP ITSLISPSFQ  60
NSKGLPVRLG EVDCPFYMKT GSCKYGATCR YNHPDRNAIN PPIAGLGAST LPSSATSLNI  120
GLLSPAVSVY QAFDPRLSNP MSQVGIAETI YPQRPGQIEC DGAVICPYYL KTGTCKFGAT  180
CKFDHPPPGE VVEIAKSQGT SADGGKQNTD RMFFP*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0129s00080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150392e-74AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490221.11e-148zinc finger CCCH domain-containing protein 37
SwissprotQ941Q33e-63C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A1S3T8X71e-147A0A1S3T8X7_VIGRR; zinc finger CCCH domain-containing protein 37
STRINGXP_007133464.11e-128(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-65floral homeotic protein (HUA1)