PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0134s00230.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 259aa    MW: 29743.7 Da    PI: 8.6341
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0134s00230.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.83.4e-121732471794
                        E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                        ++p ++a+++ +++ + +t ++     +sW+vk+ +  ks    +++GW +F+++ +Lk gD ++F+++++++  ++v
  Vradi0134s00230.1 173 TIPYEYAKKFAEEHGRFVTFRV---GDKSWQVKFLFYEKSHYGRFSRGWHDFARDCDLKMGDACIFRMVDQENLVFNV 247
                        7999999998766666555554...45*******99888888889**********************88766664555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.123165IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-13472IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-12565IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.0E-7163253IPR003340B3 DNA binding domain
CDDcd100178.31E-14166251No hitNo description
Gene3DG3DSA:2.40.330.103.2E-15172251IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-15173252IPR015300DNA-binding pseudobarrel domain
PfamPF023627.5E-10173247IPR003340B3 DNA binding domain
PROSITE profilePS5086310.926174253IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MTNPVTLSLP NGTKNKVHWV NKDGDVWLCN GWKEFAEYTK LDVSHFLVFR YEGNSCFNVI  60
IFGKSALEIE YPLSREAANE KVEEIIEGGE FSAKFSEKGS KRPKEEPQEK EEQKPKKYSK  120
NRACSDYSKH MNNGQKGVSH LPSSSLKTPM TTQARTPKPN DDLFICIKSE FPTIPYEYAK  180
KFAEEHGRFV TFRVGDKSWQ VKFLFYEKSH YGRFSRGWHD FARDCDLKMG DACIFRMVDQ  240
ENLVFNVSCL KVNKSPGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0134s00230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027913880.11e-145B3 domain-containing transcription factor VRN1-like
TrEMBLA0A1S3TAT27e-86A0A1S3TAT2_VIGRR; B3 domain-containing transcription factor VRN1-like
STRINGXP_007153107.13e-74(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF140231017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.11e-18B3 family protein