PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0153s00450.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 124aa    MW: 13605.9 Da    PI: 8.0324
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0153s00450.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.54.1e-4271061100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +Ca+Ck+lrr+C++dC++apyfp+++  kfa+vhk+FG sn++k+lk++p e+r da++slvyeA+ar+ +PvyG+vg+i+kl+ q+++l+ 
  Vradi0153s00450.1   7 PCASCKLLRRRCSPDCIFAPYFPSNDLCKFAIVHKVFGCSNITKILKNVPVEQRGDAVRSLVYEANARIINPVYGCVGIISKLETQVSELQM 98 
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        +la+++ee
  Vradi0153s00450.1  99 QLAVVEEE 106
                        ***99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.1346107IPR004883Lateral organ boundaries, LOB
PfamPF031955.6E-427104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MGGTSSPCAS CKLLRRRCSP DCIFAPYFPS NDLCKFAIVH KVFGCSNITK ILKNVPVEQR  60
GDAVRSLVYE ANARIINPVY GCVGIISKLE TQVSELQMQL AVVEEEILSI KMQQEFIFTN  120
GST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4131087112LOB family transfactor Ramosa2.1
5ly0_B2e-4131087112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0153s00450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-109AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014489817.16e-87LOB domain-containing protein 12
SwissprotQ8LBW39e-56LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A1S3T7T41e-85A0A1S3T7T4_VIGRR; LOB domain-containing protein 12
STRINGXP_007142160.11e-72(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16643497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.14e-58LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]