PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0161s00550.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 183aa    MW: 20363 Da    PI: 9.5127
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0161s00550.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.71.5e-107696222
                       --SS-EEEEEEE--TT-SS-E CS
               WRKY  2 dDgynWrKYGqKevkgsefpr 22
                       +D ++WrKYGqK++kgs++pr
  Vradi0161s00550.1 76 SDSWAWRKYGQKPIKGSPYPR 96
                       69******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-97096IPR003657WRKY domain
SuperFamilySSF1182906.8E-87396IPR003657WRKY domain
SMARTSM007743.8E-475118IPR003657WRKY domain
PROSITE profilePS5081112.2667696IPR003657WRKY domain
PfamPF031063.5E-67796IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MDTKLTNINE QEDSDGPQES IAHSPPSSSL FNIDGVLTSP TSSSKRRRAI QKRVVQIPIK  60
ETEGCRLKGE SNTPPSDSWA WRKYGQKPIK GSPYPRLIPF PKRGTTGVAA PRAARHGNKW  120
KGAAWTPQWY HADVESALLP MREEDELLFA DLGELPECSV MFRQGLLAER RRYTAPWCGT  180
TS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0161s00550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150664e-87AP015066.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0022, complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523473.11e-61probable WRKY transcription factor 65
TrEMBLA0A1S3VYQ73e-60A0A1S3VYQ7_VIGRR; probable WRKY transcription factor 65
STRINGXP_007159480.12e-52(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2405133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.13e-25WRKY DNA-binding protein 65