PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0169s00060.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 205aa    MW: 22417.8 Da    PI: 8.2983
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0169s00060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.13.2e-2941081100
             DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                        +C++C++lr++C++dCv++p++      ++q++++ ++ k++G++ +l+l++a+p+++r+d+++sl+yeA+ r+ +P  G+vg+++++++  
  Vradi0169s00060.1   4 SCNGCRILRKGCTDDCVIRPCLewinsSEAQANATLFLSKFYGRAGLLNLINAAPQQHRTDVFKSLMYEACGRIINPTFGSVGLFWSGEWAQ 95 
                        6*********************9998777889************************************************************ PP

             DUF260  88 eqlkaelallkee 100
                        +q++++++l++++
  Vradi0169s00060.1  96 CQAAVDAVLAGSQ 108
                        ******9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.3513109IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-244103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MKISCNGCRI LRKGCTDDCV IRPCLEWINS SEAQANATLF LSKFYGRAGL LNLINAAPQQ  60
HRTDVFKSLM YEACGRIINP TFGSVGLFWS GEWAQCQAAV DAVLAGSQIN VMPTSHSQSD  120
HGSKLLDIRH VSKDANMDKV KGKSKKHKDI MMPMSHEGLV NSTTLWKPIL GHEPRQLEGG  180
NVLVSQDKPR INDGANIDLE LTLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0169s00060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-159AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523544.11e-152LOB domain-containing protein 42-like
SwissprotQ9CA302e-60LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A1S3VZR81e-151A0A1S3VZR8_VIGRR; LOB domain-containing protein 42-like
STRINGXP_007153445.11e-128(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.12e-62LOB domain-containing protein 42