PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0169s00070.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CO-like
Protein Properties Length: 371aa    MW: 42031.8 Da    PI: 9.3787
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0169s00070.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.53.2e-091659339
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                       +r C+ + ++++q++C  ++ +lC+ C ++ H+        H+v
  Vradi0169s00070.1 16 ARACDSCIRNRAQWYCAADDAFLCQACDSSVHSAnplarrhHRV 59
                       578*****************************668888886655 PP
2CCT64.62.9e-22313356144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Rea++lRY+eKr++R+F+Kk+rYe+RK +Ae+RpR+KGrFvk++
  Vradi0169s00070.1 313 REARVLRYREKRRKRLFSKKVRYEVRKMNAEKRPRMKGRFVKRS 356
                        9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6371461IPR000315B-box-type zinc finger
SMARTSM003361.7E-91461IPR000315B-box-type zinc finger
PfamPF006433.7E-71658IPR000315B-box-type zinc finger
CDDcd000213.80E-91761No hitNo description
PROSITE profilePS5101716.013313355IPR010402CCT domain
PfamPF062038.1E-17313355IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSSNKNKGKT VGAKTARACD SCIRNRAQWY CAADDAFLCQ ACDSSVHSAN PLARRHHRVR  60
LKIISRINSN NDLSSGMSNI RVPSWYKGFT KKPRTPRHRR HDNKGVKSPF NVVPEVCPQD  120
TISNSHEEST DQLLYRVPAT PSSEQGISMT DERKVDLLGC ESAIEIAEFS ADVESLLGKG  180
LESEFVGMEE LGLVGAKDVE EHASWESCVD NENVSLTYEE AKDKVVALDK NQQVLRENYR  240
LKKKILLLQL DYEAVISAWT SQKSPWTTAD KPDLGTQQFW PHCMGTCGVE FYHPRGELGE  300
LSVCHSTMAD DGREARVLRY REKRRKRLFS KKVRYEVRKM NAEKRPRMKG RFVKRSCIVT  360
PPTVPLLNRK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0169s00070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523547.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A1S3VZ820.0A0A1S3VZ82_VIGRR; zinc finger protein CONSTANS-LIKE 16
STRINGXP_007153446.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.16e-72B-box type zinc finger protein with CCT domain