PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0169s00170.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 207aa    MW: 23306.7 Da    PI: 4.4734
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0169s00170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS58.81.1e-18147865129
               GRAS  65 ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLl 129
                        +p+++++++ +e + + k +++++P+ kf+hltaN+aIlea++ ++ +Hi Df++ qG+QW+a l
  Vradi0169s00170.1  14 EPKSAKTTTLEELMLSCKDLNDACPYSKFAHLTANHAILEATKDASNIHIPDFGLVQGIQWVARL 78 
                        5666666778888888888******************************************9866 PP
2GRAS87.52.2e-2784196186301
               GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                        ++dl+ +++ ++p+Eal+Vn++lql++llde+ +  +   + L+l ksl+Pk+v++ e ea++++ sF++rf  a++y+sa+f+sl+ +l  
  Vradi0169s00170.1  84 IHDLDRNNFCINPDEALVVNFMLQLYNLLDEPPTAVD---TALWLAKSLNPKIVTLDEYEASLTRVSFVNRFKTAFRYFSAVFESLDPNLVV 172
                        789999***********************99999888...**************************************************** PP

               GRAS 278 eseerikvErellgreivnvvace 301
                        +s er  vE  ll+r+i  v+   
  Vradi0169s00170.1 173 DSPERFQVESLLLERRIDAVIELV 196
                        ******************999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098515.6741206IPR005202Transcription factor GRAS
PfamPF035143.9E-161478IPR005202Transcription factor GRAS
PfamPF035147.4E-2584196IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDKSSLLTLS YKGEPKSAKT TTLEELMLSC KDLNDACPYS KFAHLTANHA ILEATKDASN  60
IHIPDFGLVQ GIQWVARLSP LTPIHDLDRN NFCINPDEAL VVNFMLQLYN LLDEPPTAVD  120
TALWLAKSLN PKIVTLDEYE ASLTRVSFVN RFKTAFRYFS AVFESLDPNL VVDSPERFQV  180
ESLLLERRID AVIELVPVRE SMEDME*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-531319360296GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0169s00170.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-130AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522771.11e-104scarecrow-like protein 4 isoform X2
SwissprotA0A024B7I01e-67SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A1S3VWK41e-103A0A1S3VWK4_VIGRR; scarecrow-like protein 4 isoform X2
STRINGGLYMA12G02060.12e-89(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-64GRAS family protein