PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0171s00090.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 682aa    MW: 74474.1 Da    PI: 5.8994
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0171s00090.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS319.76.3e-983256802374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        +e+L+++Ae +++g+lela+ +Larl+++ sp g+p+qR+a+yf+eAL+  l++  +   ++++ s+t       ++ a+k fse+sP+l+f
  Vradi0171s00090.1 325 TEQLFKAAELIDAGNLELAHGILARLNHQLSPFGRPFQRAAFYFKEALQLGLHS--NANNSSMTFSPT---GLLLKIGAYKSFSEISPVLQF 411
                        689***************************************************..333333444444...4999***************** PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                        +++t+Nqa+leaveg +r+HiiDfdi+ G+QW +++q+La R++g+p+lRiT+++sp+++++ el+ t+e+L+++A e++++fe ++l  ++
  Vradi0171s00090.1 412 ANFTCNQALLEAVEGFDRIHIIDFDIGFGGQWSSFMQELALRNGGAPELRITAFVSPSHHDEIELSFTQENLKQYAGEINMSFELEILSFES 503
                        ***************************************************************************************96666 PP

               GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklp 276
                        l++   +   ++  Ea++Vn+ +  ++ +      +s+ +  L++vk+l Pkvvv  ++ +d+++++F +++  al+ ys l++sl ++++ 
  Vradi0171s00090.1 504 LNSA-SWPQPLRDCEAVVVNMPIGSFSSY------PSYLPLALRFVKQLMPKVVVTLDRSCDRTDAPFPQHLNFALQSYSGLLESLdAVNV- 587
                        6666.44446799**********988887......777788*********************************************55554. PP

               GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                         + +  +++E+ +l+++ +++v  ++      +e+  +W++ l ++GF+p+++s+++++qa++l+++++++g++ve+++ slvl+W+++ L+
  Vradi0171s00090.1 588 -HPDVLQMIEKYYLQPAMEKLVLGRHGF----QERTLSWKNLLLSSGFSPLTFSNFTESQAECLVQRTPGKGFHVEKRQSSLVLCWQRKDLI 674
                        .5578899**************987776....68888******************************************************* PP

               GRAS 369 svSaWr 374
                        svS Wr
  Vradi0171s00090.1 675 SVSTWR 680
                        *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.814298660IPR005202Transcription factor GRAS
PfamPF035142.2E-95325680IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MATLKTSPPT SSSTLSSSRG SSGCGGGCGS TDSTTGAGAA KVSTEKENNP PQAGLEVGQG  60
RCGLRMEDWE SVLSESSGQD NSILKLIMGD IEDPSVGLTK LLQGGSASQD VEFNGVGVGF  120
SLVDQSSVLD PIPSVNFVSS IDPSGPGNCS DFPFNSHSNV NSNISRIGSG VNPPNHGFPD  180
SASNLSPVSL SHGVFQPQQQ HPAIEPLDEK LQVLNPQFIL NQNQTQFMAN PGSVLPLNYA  240
QLQEHHQLLP QPPAKRLNCG PNYQVPKAPF LDSGQELLLR RQQQQLQLLP HHLLQRSSML  300
VAPKQKMASP SGEDLATHQL QQAITEQLFK AAELIDAGNL ELAHGILARL NHQLSPFGRP  360
FQRAAFYFKE ALQLGLHSNA NNSSMTFSPT GLLLKIGAYK SFSEISPVLQ FANFTCNQAL  420
LEAVEGFDRI HIIDFDIGFG GQWSSFMQEL ALRNGGAPEL RITAFVSPSH HDEIELSFTQ  480
ENLKQYAGEI NMSFELEILS FESLNSASWP QPLRDCEAVV VNMPIGSFSS YPSYLPLALR  540
FVKQLMPKVV VTLDRSCDRT DAPFPQHLNF ALQSYSGLLE SLDAVNVHPD VLQMIEKYYL  600
QPAMEKLVLG RHGFQERTLS WKNLLLSSGF SPLTFSNFTE SQAECLVQRT PGKGFHVEKR  660
QSSLVLCWQR KDLISVSTWR C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-3033067924377Protein SCARECROW
5b3h_D4e-3033067924377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0171s00090.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014524041.10.0scarecrow-like protein 22
RefseqXP_014524042.10.0scarecrow-like protein 22
RefseqXP_014524043.10.0scarecrow-like protein 22
RefseqXP_022632642.10.0scarecrow-like protein 22
SwissprotO813161e-140SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A1S3W0Q20.0A0A1S3W0Q2_VIGRR; scarecrow-like protein 22
STRINGXP_007140802.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-127GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]