PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0171s00130.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 204aa    MW: 22050.7 Da    PI: 8.3915
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0171s00130.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00036426123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       +kC+ C +sFs+   L  H+r+H
  Vradi0171s00130.1  4 HKCKLCFRSFSNGRALGGHMRSH 26
                       79********************9 PP
2zf-C2H211.60.00087130152123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++Cp C ++F +   L  H rtH
  Vradi0171s00130.1 130 HECPVCFRVFASGQALGGHKRTH 152
                        79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.5E-6427IPR007087Zinc finger, C2H2
SMARTSM003550.065426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.679431IPR007087Zinc finger, C2H2
SuperFamilySSF576671.4E-8426No hitNo description
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139121.8E-684100IPR007087Zinc finger, C2H2
SuperFamilySSF576671.4E-8125152No hitNo description
Gene3DG3DSA:3.30.160.609.3E-4128155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.307130157IPR007087Zinc finger, C2H2
PfamPF139127.6E-11130152IPR007087Zinc finger, C2H2
SMARTSM003550.22130152IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MDKHKCKLCF RSFSNGRALG GHMRSHMMNL PLSKPEEASP RTIQLSFEAE SASSSSSSSD  60
DDEDGDKGLC YGLRENPKRS IRLVFRSYQA LGGHRASHKK IKVNVKVDGE EAEVEHRKKS  120
GTCGAEKKIH ECPVCFRVFA SGQALGGHKR THVTGSAPAT VASASAKFGN SFIDLNLPAP  180
IDEDEASQIE NSAVSDAEFV KTR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0171s00130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022632659.13e-79zinc finger protein ZAT9
SwissprotQ9M2028e-27ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLA0A3Q0EQF47e-78A0A3Q0EQF4_VIGRR; zinc finger protein ZAT9
STRINGXP_007140808.13e-76(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.17e-29C2H2-like zinc finger protein