PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0179s00040.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 241aa    MW: 27495.3 Da    PI: 4.9762
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0179s00040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61.1e-183586556
                       SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       ++f+++q++ Le++Fe ++ +  +++ +LA+ lgL+ rqV +WFqN+Ra++k
  Vradi0179s00040.1 35 RRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWK 86
                       48*************************************************9 PP
2HD-ZIP_I/II1192.5e-3834124393
        HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                         rr+s++q+k+LE++Fe+e++Lep++K +lar+Lglqprqva+WFqn+RAR+k+kqlE+dy  L+++y++l+++ e+L+ke+++L  +l++
  Vradi0179s00040.1  34 TRRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQK 124
                        79***********************************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.54E-181490IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-191688IPR009057Homeodomain-like
PROSITE profilePS5007117.0862888IPR001356Homeobox domain
SMARTSM003891.9E-153192IPR001356Homeobox domain
CDDcd000861.40E-133589No hitNo description
PfamPF000464.4E-163586IPR001356Homeobox domain
PRINTSPR000311.8E-55968IPR000047Helix-turn-helix motif
PROSITE patternPS0002706386IPR017970Homeobox, conserved site
PRINTSPR000311.8E-56884IPR000047Helix-turn-helix motif
PfamPF021831.6E-1688130IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEYTYSEGAE AETYTSSSTT PSSGMRSKKK SNNTRRFSDD QIKSLETMFE TESRLEPRKK  60
LQLARDLGLQ PRQVAIWFQN KRARWKSKQL ERDYGILQSN YNSLASRFEA LKKEKQTLLI  120
QLQKLNHLMQ KPLEAGQSRT QVEAANSMDS ESENGGTMKC ELEEKPSPSI ERSEHAHGVL  180
SDDDASIKVE HFGLEDEHGL LNFAEHADDS LTSPEDWSAF ESNALLGQTS SDYQWWDFWS  240
*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0179s00040.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311750.0KT031175.1 Glycine max clone HN_WYQ_3 homeodomain/HOMEOBOX transcription factor (Glyma07g05800.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014524102.11e-178homeobox-leucine zipper protein ATHB-12
SwissprotP468976e-66ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A1S3W0V61e-177A0A1S3W0V6_VIGRR; homeobox-leucine zipper protein ATHB-12
STRINGXP_007135294.11e-151(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-67homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]