PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0179s00190.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 148aa    MW: 16454.9 Da    PI: 4.4135
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0179s00190.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.28.8e-091444131
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartm 31
                       +g+WT+ Ed ll ++++ +G g+Wk+ +++ 
  Vradi0179s00190.1 14 KGPWTPKEDALLTKYIQAHGEGQWKSLPKKA 44
                       79************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-11543IPR009057Homeodomain-like
SuperFamilySSF466891.44E-7844IPR009057Homeodomain-like
PROSITE profilePS500906.702949IPR017877Myb-like domain
PfamPF002491.2E-61443IPR001005SANT/Myb domain
CDDcd001674.42E-51643No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MGRAPCCSKV GLHKGPWTPK EDALLTKYIQ AHGEGQWKSL PKKADSNNTY TFDSNSASAS  60
TNQEKEESPL TKESNLASEF GNVGESDDFG FFSEDHDLVN ASDMECHSYF PSDHGSLQQL  120
YEEYYHLLNM DHSQFIEMSS FGESLLV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0179s00190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-146AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014524093.11e-67transcription repressor MYB6
TrEMBLA0A1S3W0A32e-66A0A1S3W0A3_VIGRR; transcription repressor MYB6
STRINGXP_007135274.11e-53(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2714733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-19myb domain protein 111