PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0179s00230.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ZF-HD

Protein Properties

Length: 170aa MW: 19100.4 Da PI: 6.8376

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0179s00230.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	31.4	4.6e-10	5	31	34	60
ZF-HD_dimer 34 eegtaaalkCaACgCHRnFHRreveee 60 e++t +a+ C AC+CHRnFH +e ++e Vradi0179s00230.1 5 EDNTLEAVICVACDCHRNFHCKEIDNE 31 557999****************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-5	1	30	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.8E-7	2	28	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF05701	1.2E-26	100	168	IPR008545	WEB family

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MSTVEDNTLE AVICVACDCH RNFHCKEIDN EMTSFHHRTQ SSPSLHHHHQ FSSYYHHRVP 60 QHPSAGSYLH YYLATPTNAQ TKFILDAQYS FFQSFHSLPE VASAKKELEE VNLNIEKATA 120 EISCLKVAAT SLKPELEQEK ATLAAIRQRK GMASITVASL EAELEKTRS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0179s00230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	2e-95	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18350.1	1e-08	homeobox protein 24