PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0183s00150.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Dof

Protein Properties

Length: 215aa MW: 23756.5 Da PI: 7.1115

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0183s00150.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	77.5	1.6e-24	28	68	22	62
zf-Dof 22 nnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 n lsqPryfCkaCrryWtkGG+lrnvPvGgg+rkn++++ Vradi0183s00150.1 28 NTLLLSQPRYFCKACRRYWTKGGSLRNVPVGGGCRKNRRAK 68 556689********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	17.392	12	66	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-15	28	66	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-18	31	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MGNVPRILVK HMVVLSIPAT LSLPYDVNTL LLSQPRYFCK ACRRYWTKGG SLRNVPVGGG 60 CRKNRRAKSS SRHNQTQRSF ISASHDTESS PEDTHPNNNG SREIDMALVF AKFLNPKQNV 120 GEDNNASSSS NNYFTPHNVQ TENDIAVVQS PNKGLSSDPE MQLQELEYSM PLNENDAQLL 180 PITSASTLHS MSDTCWSTWS SFDLSAMEVF SSTP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0183s00150.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014522378.1	1e-112	dof zinc finger protein DOF3.5
TrEMBL	A0A1S3VVI0	1e-110	A0A1S3VVI0_VIGRR; dof zinc finger protein DOF3.5
STRING	XP_007137553.1	1e-76	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	6e-29	Dof family protein