PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0184s00290.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 348aa    MW: 39009.7 Da    PI: 6.6693
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0184s00290.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS429.92e-131234331374
               GRAS  31 aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqG 122
                        +s +g+p qR+aay++e+Laarla+s++++ykal+++e +   ss++laa+++++ev+P++kf++++aN+aI eav+ +  +HiiDfdi+qG
  Vradi0184s00290.1   2 VSVQGEPSQRIAAYMVEGLAARLAESGKSIYKALRCKEPP---SSDRLAAMQILFEVCPCFKFGFIAANNAITEAVKDDMNIHIIDFDINQG 90 
                        799************************************9...9************************************************ PP

               GRAS 123 lQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhr 212
                         Q+++L+q+LasR+++pp++R+Tgv++pes+  s   l+++g+rL+k+Ae+lg+pfef++ va+r++ +++++L+++pgEal+Vn+++qlh+
  Vradi0184s00290.1  91 SQYINLIQTLASRSRKPPHVRLTGVDDPESVqrSVGGLKNIGQRLEKLAEALGLPFEFRA-VASRTSIVTPSMLNCSPGEALVVNFAFQLHH 181
                        *****************************9999999************************.7****************************** PP

               GRAS 213 lldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                        ++desvs+ +erd++L+lvksl+Pk+v+vveq++++n+++Fl rf+ea +yysa+f+sl+++lpres++r++vEr++l+r+ivnvvaceg++
  Vradi0184s00290.1 182 MPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTTPFLPRFVEAYNYYSAVFESLDVTLPRESQDRMNVERQCLARDIVNVVACEGED 273
                        ******************************************************************************************** PP

               GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        r+er e ++kWr+r+++aGF++ p+s++++++++ l++ ++ d y+++ee g+l +gW+d++L+++SaW+
  Vradi0184s00290.1 274 RIERYEVAGKWRARITMAGFTSSPMSTNVTDEIRNLIKVMYCDRYKIKEEMGALHFGWEDKNLIVASAWK 343
                        *****************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.4211323IPR005202Transcription factor GRAS
PfamPF035146.8E-1292343IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MVSVQGEPSQ RIAAYMVEGL AARLAESGKS IYKALRCKEP PSSDRLAAMQ ILFEVCPCFK  60
FGFIAANNAI TEAVKDDMNI HIIDFDINQG SQYINLIQTL ASRSRKPPHV RLTGVDDPES  120
VQRSVGGLKN IGQRLEKLAE ALGLPFEFRA VASRTSIVTP SMLNCSPGEA LVVNFAFQLH  180
HMPDESVSTV NERDQLLRLV KSLNPKLVTV VEQDVNTNTT PFLPRFVEAY NYYSAVFESL  240
DVTLPRESQD RMNVERQCLA RDIVNVVACE GEDRIERYEV AGKWRARITM AGFTSSPMST  300
NVTDEIRNLI KVMYCDRYKI KEEMGALHFG WEDKNLIVAS AWKLPRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-67634653381Protein SCARECROW
5b3h_A6e-67634652380Protein SCARECROW
5b3h_D6e-67634652380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0184s00290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522336.10.0scarecrow-like protein 1
RefseqXP_014522337.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A1S3VVC40.0A0A1S3VVC4_VIGRR; scarecrow-like protein 1
STRINGXP_007137518.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]