PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0190s00290.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 193aa    MW: 21689.5 Da    PI: 5.7883
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0190s00290.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.12.7e-24954651
                       HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       ++ rqvtfskRr+g+ KKA+E+SvLCda+va+i+f  +gkl+eyss
  Vradi0190s00290.1  9 TTSRQVTFSKRRTGLRKKAHEISVLCDAQVALIVFNAKGKLFEYSS 54
                       689*****************************************96 PP
2K-box782.4e-26871601689
              K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                        +++ +  kL  ++e L++++R+++G+dL++Lsl+eLq+Le+qL++++k+iR++Kn+++ e+i++lqkk +  ++
  Vradi0190s00290.1  87 NWSLQCFKLTGKVEVLEKNLRNFVGQDLDPLSLRELQSLEHQLDTAIKRIRTRKNQVMNESISDLQKKVRGENS 160
                        7888999*************************************************************986555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.932756IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-22864IPR002100Transcription factor, MADS-box
SMARTSM004324.7E-20955IPR002100Transcription factor, MADS-box
PfamPF003192.3E-211052IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-161833IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-163354IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.44785172IPR002487Transcription factor, K-box
PfamPF014861.8E-2187156IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
SACVEADPTT SRQVTFSKRR TGLRKKAHEI SVLCDAQVAL IVFNAKGKLF EYSSESRYPS  60
NDLEELQQED LELKTTYGPF DNLLTGNWSL QCFKLTGKVE VLEKNLRNFV GQDLDPLSLR  120
ELQSLEHQLD TAIKRIRTRK NQVMNESISD LQKKVRGENS EAVGAVEEMD EGGAVPSTTT  180
LIPSWMLHQF AR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0190s00290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-59AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522860.11e-93truncated transcription factor CAULIFLOWER A-like
RefseqXP_022632265.11e-93truncated transcription factor CAULIFLOWER A-like
SwissprotD7SMN64e-59FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A1S3VX213e-92A0A1S3VX21_VIGRR; truncated transcription factor CAULIFLOWER A-like
STRINGGLYMA13G06811.12e-73(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-52AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]