PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0198s00150.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SRS
Protein Properties Length: 151aa    MW: 16669.3 Da    PI: 6.6126
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0198s00150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702691.5e-2184139104152
             DUF702 104 s.......lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152
                        +       lP++v+++avfrc rvs++  ge+e+aY ++v+i+GhvfkG+Lyd+G 
  Vradi0198s00150.1  84 DnagfkqsLPRHVRAPAVFRCHRVSAIGSGEDEIAYLATVHISGHVFKGFLYDHGG 139
                        03334444**********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.3E-2085138IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016241.2E-2292138IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MNVEDEASNK HVMESEESGE FRVCQDCGNR AKRDCSYKSS TSNATPSKSF SLDTSSCQQD  60
IMRDTDRCNW FDHSYGCRNL KSFDNAGFKQ SLPRHVRAPA VFRCHRVSAI GSGEDEIAYL  120
ATVHISGHVF KGFLYDHGGG ESGVFAGERN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0198s00150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150392e-82AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522814.12e-40protein LATERAL ROOT PRIMORDIUM 1
RefseqXP_027908953.12e-40protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBLA0A371II232e-40A0A371II23_MUCPR; Protein LATERAL ROOT PRIMORDIUM 1 (Fragment)
STRINGXP_007133753.11e-39(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54430.11e-16SHI-related sequence 6