PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi01g00480.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

LBD

Protein Properties

Length: 129aa MW: 14286.5 Da PI: 8.025

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi01g00480.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.8	2.2e-44	12	110	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+k+l+++++ +reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el Vradi01g00480.1 12 PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKILNEVQPYQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVLKLQKEL 105 7********************************************************************************************* PP DUF260 95 allke 99 +++++ Vradi01g00480.1 106 DATNA 110 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.73	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.8E-44	12	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MMASSSSYSN SPCAACKFLR RKCMPDCIFA PYFPPEEPQK FANVHKIFGA SNVSKILNEV 60 QPYQREDAVN SLAYEAEARI KDPVYGCVGA ISVLQRQVLK LQKELDATNA DLIRYSTCNL 120 CLLILTTN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-65	3	120	2	119	LOB family transfactor Ramosa2.1
5ly0_B	1e-65	3	120	2	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi01g00480.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	1e-179	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014508963.1	4e-84	LOB domain-containing protein 25
Swissprot	Q8L8Q3	6e-70	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A1S3US93	9e-83	A0A1S3US93_VIGRR; LOB domain-containing protein 25
STRING	XP_007143908.1	1e-78	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1091	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	3e-67	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]